Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2041 ATGCCGATCCGCAACATAGCCATTGGGAGGCCCGAAGAGGCAACTCATCCAGACGCACTGAAGGCTGGCTTGGCTGAGTTCATCTCAACTTTGATTTTTGTTTTCGCCGGCCAGGGTTCCGGTATCGCCTTCAGTAAGCTTACTGAAGGCGGCGCCGCAACCCCCGCAGGCCTTATCTCTGCCTCCATTGCCCACGCCTTCGCCCTTTTCGTTGCCGTCTCCGTCGGCGCCAACATCTCGGGTGGCCACGTGAACCCTGCCGTTACCTTCGGTGCCTTCGTCGGTGGCAACATCACCCTCCTTCGCGGCCTCGTCTACTGGGTTGCTCAGCTCCTCGGATCCGTCGTCGCTTGCTTGCTCCTTCAGTTTGTTACTGGCTCGCCCACGGGAAGCTTCGCTCTATCAGCGGGAGTGGGCGAAATAAACGCCTTGGTTTTCGAGATCGTGATGACGTTCGGATTAGTGTACACGGTGTACGCGACCGCAGTGGATCCCAAGAAGGGCAGTTTGGGAACCATCGCCCCCATCGCCATCGGCTTCATCGTCGGCGCCAACATCCTCGCCGGCGGGGCCTTCACCGGTGCCTCCATGAACCCCGCGGTGGCGTTCGGGCCGTCCGTTGTGAGCTGGGCCTGGGACAACCACTGGGTCTACTGGGCCGGCCCACTTATCGGCGGCGGCCTTGCTGGCCTCATCTACGAGTTCGTCTTCATTTCCAACGCTCATCAACAGCTCCCCATTGCCGACTATTGA 753 60.16 MPIRNIAIGRPEEATHPDALKAGLAEFISTLIFVFAGQGSGIAFSKLTEGGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGLVYWVAQLLGSVVACLLLQFVTGSPTGSFALSAGVGEINALVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWAWDNHWVYWAGPLIGGGLAGLIYEFVFISNAHQQLPIADY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14307620 14310011 - Sed0025046.1 Sed03g2041 707528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2041 250 CDD MIP 21 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2041 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2041 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2041 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2041 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2041 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2041 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2041 250 PANTHER AQUAPORIN-8 5 246 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Sed03g2041 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Sed03g2041 250 FunFam Probable aquaporin TIP1-1 4 250 - -
Sed03g2041 250 Gene3D Glycerol uptake facilitator protein. 4 249 IPR023271 -
Sed03g2041 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2041 250 SUPERFAMILY Aquaporin-like 13 244 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1813 Sed-Chr1:13270408 Sed03g2041 Sed-Chr3:14307620 1.00E-78 dispersed
Sed01g2773 Sed-Chr1:22949525 Sed03g2041 Sed-Chr3:14307620 1.70E-88 dispersed
Sed03g2041 Sed-Chr3:14307620 Sed09g1598 Sed-Chr9:39474023 1.70E-77 dispersed
Sed01g1269 Sed-Chr1:9472028 Sed03g2041 Sed-Chr3:14307620 1.10E-55 transposed
Sed01g3988 Sed-Chr1:68982161 Sed03g2041 Sed-Chr3:14307620 8.20E-80 transposed
Sed05g0587 Sed-Chr5:4291848 Sed03g2041 Sed-Chr3:14307620 2.10E-46 transposed
Sed14g0365 Sed-Chr14:3816260 Sed03g2041 Sed-Chr3:14307620 1.40E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2041 K09873 - csv:101204225 457.218