Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2083 ATGGATTTCTTACAGTCTTTGGATCCTCAAATGCTTCTGGGTTTGGTTGTCGCTGTTTTAGCCCTCGTCGTTGCGGCTCTATATTTATTGCCCTCCTCCAAGAAAAGCAAATCTGGAGGTTGCTTGGATCCAGACAGTTTCAGGGAGTTTAAGCTTATCAAGCGTGTGCAGCTGAGCCATAATGTGGCCAAGTTTACATTTACCCTACCAAATCCTACTTCAGTCTTGGGTCTTCCCATTGGACAACATATAAGTTGCAGGGGCAAGGATGGCCAAGGTGAAGAGGTTATCAAACCTTACACACCTATTACTTTGGATTCTGATGTTGGCTATTTTGAACTGGTCATAAAGATGTATCCCCAAGGAAGGATGTCGCACCATTTCCGACAGATGCGTGTTGGTGATTTTCTTGCTGTAAAAGGGCCCAAGGGGCGTTTCAGGTATCAACCCGGCCAGGTTAGAGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACTCCTATGTATCAAGTTGCTCGAGCCATATTAGAAAATCCAAATGACAAGACGAAGGTACATCTCATTTATGCCAATGTCACCCATGATGACATTCTTTTAAAGGACGAGTTGGATCTTCTTGCCTCAAGGTTCCCAGATAGCTTCAAGATCTTTTATGTCTTAAACCAGCCTCCTGAAGTGTGGGACGGTGGTGTCGGGTTCGTATCAAAGGAGATGATTCAAACGCACTGCCCTGCTCCTGCTCCTGATGTTAAGATTTTAAGATGTGGGCCACCACCAATGAACAAGGCCATGGGTGCTCATCTTGAAGCTCTTGAATATACACCTGAGATGCTGTTCATGTTCTGA 846 45.39 MDFLQSLDPQMLLGLVVAVLALVVAALYLLPSSKKSKSGGCLDPDSFREFKLIKRVQLSHNVAKFTFTLPNPTSVLGLPIGQHISCRGKDGQGEEVIKPYTPITLDSDVGYFELVIKMYPQGRMSHHFRQMRVGDFLAVKGPKGRFRYQPGQVRAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTHDDILLKDELDLLASRFPDSFKIFYVLNQPPEVWDGGVGFVSKEMIQTHCPAPAPDVKILRCGPPPMNKAMGAHLEALEYTPEMLFMF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14969593 14977945 - Sed0025281.1 Sed03g2083 707570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2083 281 FunFam NADH-cytochrome b5 reductase 40 139 - -
Sed03g2083 281 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 137 278 IPR039261 -
Sed03g2083 281 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Sed03g2083 281 PRINTS Cytochrome B5 reductase signature 157 176 - -
Sed03g2083 281 PRINTS Cytochrome B5 reductase signature 134 148 - -
Sed03g2083 281 PRINTS Cytochrome B5 reductase signature 76 87 - -
Sed03g2083 281 PRINTS Cytochrome B5 reductase signature 98 105 - -
Sed03g2083 281 PRINTS Cytochrome B5 reductase signature 195 206 - -
Sed03g2083 281 PRINTS Cytochrome B5 reductase signature 251 259 - -
Sed03g2083 281 Pfam Oxidoreductase FAD-binding domain 50 148 IPR008333 -
Sed03g2083 281 Gene3D - 140 281 IPR039261 -
Sed03g2083 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 23 281 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Sed03g2083 281 FunFam NADH-cytochrome b5 reductase 139 281 - -
Sed03g2083 281 Gene3D Translation factors 40 139 - -
Sed03g2083 281 Pfam Oxidoreductase NAD-binding domain 158 263 IPR001433 GO:0016491(InterPro)
Sed03g2083 281 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 149 IPR017927 GO:0016491(InterPro)
Sed03g2083 281 CDD cyt_b5_reduct_like 50 281 - -
Sed03g2083 281 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 195 206 IPR001709 GO:0016491(InterPro)
Sed03g2083 281 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 157 176 IPR001709 GO:0016491(InterPro)
Sed03g2083 281 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 251 259 IPR001709 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2083 K00326 - - csv:101212569 491.886
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0277 Sed-Chr2:38384357 Sed03g2083 Sed-Chr3:14969593 2.20E-121 dispersed
Sed03g2083 Sed-Chr3:14969593 Sed05g1022 Sed-Chr5:8895169 2.00E-114 dispersed
Sed03g2083 Sed-Chr3:14969593 Sed11g0102 Sed-Chr11:949917 3.00E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g84 . . . . Bpe04g01356 Bpe03g01064 Bma04g01430 Bma10g00255 . . Cma03g00173 Cma07g01119 Car03g00161 . Sed03g2083 Cpe10g01086 . Bhi03g02557 Tan03g0549 Cmetu08g0889 . Hepe04g0560 . . . . . . . . . . . . . Lsi01g01736 Csa04g01830 Chy08g00202 Cme04g02153 Blo07g01200 . Bda03g01493 Bda05g00993 . . . . . Cmo03g00203 Cmo07g01169 . . Car06g00039 . . . . . . . . . . Cla10g01589 Cam10g1638 Cec10g1687 Cco10g1651 Clacu10g1653 Cmu10g2408 Cre10g1789 Lsi03g01657 Csa03g03663 Chy04g01700 Cme08g01481
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed05g0386 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed05g0385 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed01g3465 . 1 134 NADPH P450 reductases AT5G53560 75.4 3.1e-57 218.8
Sed02g1490 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.9e-51 199.5
Sed12g0390 . 1 133 NADPH P450 reductases AT5G53560 67.7 2.5e-51 199.1
Sed04g2056 . 1 133 NADPH P450 reductases AT5G53560 61.7 9.3e-46 180.6
Sed05g0197 . 5 131 NADPH P450 reductases AT5G53560 65.4 1.2e-45 180.3
Sed02g1783 . 1 134 NADPH P450 reductases AT5G53560 56.0 4.5e-40 161.8
Sed01g3466 . 1 98 NADPH P450 reductases AT5G53560 73.5 5.5e-38 154.8
Sed05g0198 . 14 124 NADPH P450 reductases AT5G53560 65.8 7.1e-38 154.5
Sed12g0390 . 1 132 NADPH P450 reductases AT5G48810 64.2 1.4e-47 186.8
Sed02g1490 . 1 132 NADPH P450 reductases AT5G48810 63.4 1.8e-47 186.4
Sed04g2056 . 1 133 NADPH P450 reductases AT5G48810 58.5 3.1e-44 175.6
Sed01g3465 . 1 134 NADPH P450 reductases AT5G48810 58.1 7.0e-44 174.5
Sed05g0197 . 5 131 NADPH P450 reductases AT5G48810 62.0 9.1e-44 174.1
Sed05g0386 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed05g0385 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed02g1783 . 1 134 NADPH P450 reductases AT5G48810 52.2 2.8e-37 152.5
Sed12g0390 . 22 133 NADPH P450 reductases AT2G32720 84.8 1.3e-50 196.8
Sed02g1490 . 22 133 NADPH P450 reductases AT2G32720 83.0 2.1e-50 196.1
Sed04g2056 . 22 133 NADPH P450 reductases AT2G32720 76.8 5.4e-46 181.4
Sed05g0198 . 14 125 NADPH P450 reductases AT2G32720 70.5 1.8e-41 166.4
Sed05g0197 . 21 132 NADPH P450 reductases AT2G32720 69.6 1.5e-40 163.3
Sed05g0386 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed05g0385 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed01g3465 . 22 133 NADPH P450 reductases AT2G32720 63.4 1.2e-37 153.7
Sed03g2083 . 2 281 NADPH P450 reductases AT5G17770 79.3 1.8e-128 456.4
Sed02g0277 . 2 280 NADPH P450 reductases AT5G17770 73.1 9.1e-120 427.6
Sed05g1022 . 1 282 NADPH P450 reductases AT5G17770 68.9 1.2e-114 410.6
Sed05g0386 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed05g0385 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed01g3465 . 1 134 NADPH P450 reductases AT5G53560 75.4 3.1e-57 218.8
Sed02g1490 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.9e-51 199.5
Sed12g0390 . 1 133 NADPH P450 reductases AT5G53560 67.7 2.5e-51 199.1
Sed04g2056 . 1 133 NADPH P450 reductases AT5G53560 61.7 9.3e-46 180.6
Sed05g0197 . 5 131 NADPH P450 reductases AT5G53560 65.4 1.2e-45 180.3
Sed02g1783 . 1 134 NADPH P450 reductases AT5G53560 56.0 4.5e-40 161.8
Sed01g3466 . 1 98 NADPH P450 reductases AT5G53560 73.5 5.5e-38 154.8
Sed05g0198 . 14 124 NADPH P450 reductases AT5G53560 65.8 7.1e-38 154.5
Sed12g0390 . 1 132 NADPH P450 reductases AT5G48810 64.2 1.4e-47 186.8
Sed02g1490 . 1 132 NADPH P450 reductases AT5G48810 63.4 1.8e-47 186.4
Sed04g2056 . 1 133 NADPH P450 reductases AT5G48810 58.5 3.1e-44 175.6
Sed01g3465 . 1 134 NADPH P450 reductases AT5G48810 58.1 7.0e-44 174.5
Sed05g0197 . 5 131 NADPH P450 reductases AT5G48810 62.0 9.1e-44 174.1
Sed05g0386 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed05g0385 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed02g1783 . 1 134 NADPH P450 reductases AT5G48810 52.2 2.8e-37 152.5
Sed12g0390 . 22 133 NADPH P450 reductases AT2G32720 84.8 1.3e-50 196.8
Sed02g1490 . 22 133 NADPH P450 reductases AT2G32720 83.0 2.1e-50 196.1
Sed04g2056 . 22 133 NADPH P450 reductases AT2G32720 76.8 5.4e-46 181.4
Sed05g0198 . 14 125 NADPH P450 reductases AT2G32720 70.5 1.8e-41 166.4
Sed05g0197 . 21 132 NADPH P450 reductases AT2G32720 69.6 1.5e-40 163.3
Sed05g0386 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed05g0385 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed01g3465 . 22 133 NADPH P450 reductases AT2G32720 63.4 1.2e-37 153.7
Sed03g2083 . 2 281 NADPH P450 reductases AT5G17770 79.3 1.8e-128 456.4
Sed02g0277 . 2 280 NADPH P450 reductases AT5G17770 73.1 9.1e-120 427.6
Sed05g1022 . 1 282 NADPH P450 reductases AT5G17770 68.9 1.2e-114 410.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86