Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2083 ATGGATTTCTTACAGTCTTTGGATCCTCAAATGCTTCTGGGTTTGGTTGTCGCTGTTTTAGCCCTCGTCGTTGCGGCTCTATATTTATTGCCCTCCTCCAAGAAAAGCAAATCTGGAGGTTGCTTGGATCCAGACAGTTTCAGGGAGTTTAAGCTTATCAAGCGTGTGCAGCTGAGCCATAATGTGGCCAAGTTTACATTTACCCTACCAAATCCTACTTCAGTCTTGGGTCTTCCCATTGGACAACATATAAGTTGCAGGGGCAAGGATGGCCAAGGTGAAGAGGTTATCAAACCTTACACACCTATTACTTTGGATTCTGATGTTGGCTATTTTGAACTGGTCATAAAGATGTATCCCCAAGGAAGGATGTCGCACCATTTCCGACAGATGCGTGTTGGTGATTTTCTTGCTGTAAAAGGGCCCAAGGGGCGTTTCAGGTATCAACCCGGCCAGGTTAGAGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACTCCTATGTATCAAGTTGCTCGAGCCATATTAGAAAATCCAAATGACAAGACGAAGGTACATCTCATTTATGCCAATGTCACCCATGATGACATTCTTTTAAAGGACGAGTTGGATCTTCTTGCCTCAAGGTTCCCAGATAGCTTCAAGATCTTTTATGTCTTAAACCAGCCTCCTGAAGTGTGGGACGGTGGTGTCGGGTTCGTATCAAAGGAGATGATTCAAACGCACTGCCCTGCTCCTGCTCCTGATGTTAAGATTTTAAGATGTGGGCCACCACCAATGAACAAGGCCATGGGTGCTCATCTTGAAGCTCTTGAATATACACCTGAGATGCTGTTCATGTTCTGA 846 45.39 MDFLQSLDPQMLLGLVVAVLALVVAALYLLPSSKKSKSGGCLDPDSFREFKLIKRVQLSHNVAKFTFTLPNPTSVLGLPIGQHISCRGKDGQGEEVIKPYTPITLDSDVGYFELVIKMYPQGRMSHHFRQMRVGDFLAVKGPKGRFRYQPGQVRAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTHDDILLKDELDLLASRFPDSFKIFYVLNQPPEVWDGGVGFVSKEMIQTHCPAPAPDVKILRCGPPPMNKAMGAHLEALEYTPEMLFMF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14969593 14977945 - Sed0025281.1 Sed03g2083 707570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2083 281 FunFam NADH-cytochrome b5 reductase 40 139 - -
Sed03g2083 281 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 137 278 IPR039261 -
Sed03g2083 281 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Sed03g2083 281 PRINTS Cytochrome B5 reductase signature 157 176 - -
Sed03g2083 281 PRINTS Cytochrome B5 reductase signature 134 148 - -
Sed03g2083 281 PRINTS Cytochrome B5 reductase signature 76 87 - -
Sed03g2083 281 PRINTS Cytochrome B5 reductase signature 98 105 - -
Sed03g2083 281 PRINTS Cytochrome B5 reductase signature 195 206 - -
Sed03g2083 281 PRINTS Cytochrome B5 reductase signature 251 259 - -
Sed03g2083 281 Pfam Oxidoreductase FAD-binding domain 50 148 IPR008333 -
Sed03g2083 281 Gene3D - 140 281 IPR039261 -
Sed03g2083 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 23 281 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Sed03g2083 281 FunFam NADH-cytochrome b5 reductase 139 281 - -
Sed03g2083 281 Gene3D Translation factors 40 139 - -
Sed03g2083 281 Pfam Oxidoreductase NAD-binding domain 158 263 IPR001433 GO:0016491(InterPro)
Sed03g2083 281 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 149 IPR017927 GO:0016491(InterPro)
Sed03g2083 281 CDD cyt_b5_reduct_like 50 281 - -
Sed03g2083 281 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 195 206 IPR001709 GO:0016491(InterPro)
Sed03g2083 281 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 157 176 IPR001709 GO:0016491(InterPro)
Sed03g2083 281 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 251 259 IPR001709 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0277 Sed-Chr2:38384357 Sed03g2083 Sed-Chr3:14969593 2.20E-121 dispersed
Sed03g2083 Sed-Chr3:14969593 Sed05g1022 Sed-Chr5:8895169 2.00E-114 dispersed
Sed03g2083 Sed-Chr3:14969593 Sed11g0102 Sed-Chr11:949917 3.00E-54 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2083 K00326 - csv:101212569 491.886