Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2137 ATGGCTTCAAGACCAGTAGTTCCCCAACAAATCAAAGGTGAGGTGATGATCGGCGGAGGAAAGCCGGCAAAGGGCGGAGTGGCGCCGGATGCAAGGAACCGCCGCGCATTGGGCGATATTGGGAATCTGGTAACTGTTCGAGGAATTGACGCAAACGTGAATCGCCCTGTTACAAGAAGTTTCTGTGCTCAGTTGCTTGCCAATGCCCAAGCTGATAATAATAATAATAATAATAATAAGAAACAAGTGCTACATGGGGGTGTTGTGGCTGTTAAGAAACCAACAGCTCCCAACCCAGCCCCGAAGAAAGTCGCTGTTGAGGTGATCGAGATAAGTCCGGATACTGTCGAAAAAGATCACGGCAAGAAATCCAAAGGAGAAGGCGTCTCAAAGAACAAGGCTCAGACTCTCACTTCAGTCCTGACAGCTAGAAGCAAGGCTGCTTGTGGTGTAACCAAGAAACCCAAGGAACAAATTTTTGACATAGATGCTGCGGATGTTGGAAATGAGTTGGCAGAAGTTGAATATGTTGAGGACATGTATAAGTTCTACAAGGAAGTTGAGAATGAGAATAGGCCTCATGATTATATGGATTCACAACCTGAAATCAACACTTCAATGAGGGCAATCTTGGTGGATTGGCTGGTTGATGTCCACAACAAGTTTGAACTTTCACTCGAAACCTTCTATCTCACGATCAACATAATCGACCGATTCCTTACAACAAAGGTAGTTCCGAGAAGGGAATTACAGTTGCTTGGTATTGGGGCAATGCTCATAGCCTCAAAATACGAAGAGATCTGGGCACCAGAGGTAAATGACTTTGTGTGCATTTCAGATAGAGCTTACACCAATGAACAGATACTAGTGATGGAGAAAAAGATACTTGGGAAGCTGGAATGGACCTTCACCGTGCCTACACCATATGTTTTCCTTGCTCGATTCATCAAGGCGTCGAAGGACTCTGATCATGAGATGGAAAATCTGGTGTATTTTCTGGGTGAACTTGGGATAATGCATTACAACACCTCAATAATGTACTGCCCATCAATGATTGCTGCCTCAGCAGTCTATGCGGCTCGATGCACGCTGAAGAAAACTCCTGCTTGGGATGACACTCTGAAACTTCACACTGGTTTCTCAGAGCCCCAACTAATTGATTCAAGCAAGAACAAGCTTCAAGTAATATTCCGAAAGTACTCCAGCTCCGACCGGGGAGCGGTTGCCTTGCTTCAGCCAGCCAAAGCTCTATTGGCTCTTAATACAGCTGCTCCTTGA 1278 45.46 MASRPVVPQQIKGEVMIGGGKPAKGGVAPDARNRRALGDIGNLVTVRGIDANVNRPVTRSFCAQLLANAQADNNNNNNNKKQVLHGGVVAVKKPTAPNPAPKKVAVEVIEISPDTVEKDHGKKSKGEGVSKNKAQTLTSVLTARSKAACGVTKKPKEQIFDIDAADVGNELAEVEYVEDMYKFYKEVENENRPHDYMDSQPEINTSMRAILVDWLVDVHNKFELSLETFYLTINIIDRFLTTKVVPRRELQLLGIGAMLIASKYEEIWAPEVNDFVCISDRAYTNEQILVMEKKILGKLEWTFTVPTPYVFLARFIKASKDSDHEMENLVYFLGELGIMHYNTSIMYCPSMIAASAVYAARCTLKKTPAWDDTLKLHTGFSEPQLIDSSKNKLQVIFRKYSSSDRGAVALLQPAKALLALNTAAP 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15528787 15530934 - Sed0021002.1 Sed03g2137 707624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2137 425 SMART Cyclin_C_2 306 414 IPR004367 -
Sed03g2137 425 Gene3D - 193 304 - -
Sed03g2137 425 PANTHER CYCLINS 154 401 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed03g2137 425 FunFam G2/mitotic-specific cyclin 192 304 - -
Sed03g2137 425 ProSitePatterns Cyclins signature. 208 239 IPR048258 -
Sed03g2137 425 Pfam Cyclin, N-terminal domain 179 302 IPR006671 -
Sed03g2137 425 SUPERFAMILY Cyclin-like 168 302 IPR036915 -
Sed03g2137 425 CDD CYCLIN_AtCycB-like_rpt1 156 301 - -
Sed03g2137 425 Gene3D - 179 409 - -
Sed03g2137 425 PIRSF Cyclin_A_B_D_E 2 424 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Sed03g2137 425 SMART cyclin_7 310 394 IPR013763 -
Sed03g2137 425 SMART cyclin_7 213 297 IPR013763 -
Sed03g2137 425 Pfam Cyclin, C-terminal domain 306 413 IPR004367 -
Sed03g2137 425 SUPERFAMILY Cyclin-like 305 415 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2137 Sed-Chr3:15528787 Sed03g2149 Sed-Chr3:15582286 1.00E-231 dispersed
Sed03g2137 Sed-Chr3:15528787 Sed03g2138 Sed-Chr3:15528787 6.20E-229 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2137 K21777 - csv:101217210 630.557