Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g2137 | ATGGCTTCAAGACCAGTAGTTCCCCAACAAATCAAAGGTGAGGTGATGATCGGCGGAGGAAAGCCGGCAAAGGGCGGAGTGGCGCCGGATGCAAGGAACCGCCGCGCATTGGGCGATATTGGGAATCTGGTAACTGTTCGAGGAATTGACGCAAACGTGAATCGCCCTGTTACAAGAAGTTTCTGTGCTCAGTTGCTTGCCAATGCCCAAGCTGATAATAATAATAATAATAATAATAAGAAACAAGTGCTACATGGGGGTGTTGTGGCTGTTAAGAAACCAACAGCTCCCAACCCAGCCCCGAAGAAAGTCGCTGTTGAGGTGATCGAGATAAGTCCGGATACTGTCGAAAAAGATCACGGCAAGAAATCCAAAGGAGAAGGCGTCTCAAAGAACAAGGCTCAGACTCTCACTTCAGTCCTGACAGCTAGAAGCAAGGCTGCTTGTGGTGTAACCAAGAAACCCAAGGAACAAATTTTTGACATAGATGCTGCGGATGTTGGAAATGAGTTGGCAGAAGTTGAATATGTTGAGGACATGTATAAGTTCTACAAGGAAGTTGAGAATGAGAATAGGCCTCATGATTATATGGATTCACAACCTGAAATCAACACTTCAATGAGGGCAATCTTGGTGGATTGGCTGGTTGATGTCCACAACAAGTTTGAACTTTCACTCGAAACCTTCTATCTCACGATCAACATAATCGACCGATTCCTTACAACAAAGGTAGTTCCGAGAAGGGAATTACAGTTGCTTGGTATTGGGGCAATGCTCATAGCCTCAAAATACGAAGAGATCTGGGCACCAGAGGTAAATGACTTTGTGTGCATTTCAGATAGAGCTTACACCAATGAACAGATACTAGTGATGGAGAAAAAGATACTTGGGAAGCTGGAATGGACCTTCACCGTGCCTACACCATATGTTTTCCTTGCTCGATTCATCAAGGCGTCGAAGGACTCTGATCATGAGATGGAAAATCTGGTGTATTTTCTGGGTGAACTTGGGATAATGCATTACAACACCTCAATAATGTACTGCCCATCAATGATTGCTGCCTCAGCAGTCTATGCGGCTCGATGCACGCTGAAGAAAACTCCTGCTTGGGATGACACTCTGAAACTTCACACTGGTTTCTCAGAGCCCCAACTAATTGATTCAAGCAAGAACAAGCTTCAAGTAATATTCCGAAAGTACTCCAGCTCCGACCGGGGAGCGGTTGCCTTGCTTCAGCCAGCCAAAGCTCTATTGGCTCTTAATACAGCTGCTCCTTGA | 1278 | 45.46 | MASRPVVPQQIKGEVMIGGGKPAKGGVAPDARNRRALGDIGNLVTVRGIDANVNRPVTRSFCAQLLANAQADNNNNNNNKKQVLHGGVVAVKKPTAPNPAPKKVAVEVIEISPDTVEKDHGKKSKGEGVSKNKAQTLTSVLTARSKAACGVTKKPKEQIFDIDAADVGNELAEVEYVEDMYKFYKEVENENRPHDYMDSQPEINTSMRAILVDWLVDVHNKFELSLETFYLTINIIDRFLTTKVVPRRELQLLGIGAMLIASKYEEIWAPEVNDFVCISDRAYTNEQILVMEKKILGKLEWTFTVPTPYVFLARFIKASKDSDHEMENLVYFLGELGIMHYNTSIMYCPSMIAASAVYAARCTLKKTPAWDDTLKLHTGFSEPQLIDSSKNKLQVIFRKYSSSDRGAVALLQPAKALLALNTAAP | 425 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 15528787 | 15530934 | - | Sed0021002.1 | Sed03g2137 | 707624 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g2137 | 425 | SMART | Cyclin_C_2 | 306 | 414 | IPR004367 | - | |
Sed03g2137 | 425 | Gene3D | - | 193 | 304 | - | - | |
Sed03g2137 | 425 | PANTHER | CYCLINS | 154 | 401 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Sed03g2137 | 425 | FunFam | G2/mitotic-specific cyclin | 192 | 304 | - | - | |
Sed03g2137 | 425 | ProSitePatterns | Cyclins signature. | 208 | 239 | IPR048258 | - | |
Sed03g2137 | 425 | Pfam | Cyclin, N-terminal domain | 179 | 302 | IPR006671 | - | |
Sed03g2137 | 425 | SUPERFAMILY | Cyclin-like | 168 | 302 | IPR036915 | - | |
Sed03g2137 | 425 | CDD | CYCLIN_AtCycB-like_rpt1 | 156 | 301 | - | - | |
Sed03g2137 | 425 | Gene3D | - | 179 | 409 | - | - | |
Sed03g2137 | 425 | PIRSF | Cyclin_A_B_D_E | 2 | 424 | IPR046965 | GO:0016538(InterPro)|GO:0044772(InterPro) | |
Sed03g2137 | 425 | SMART | cyclin_7 | 310 | 394 | IPR013763 | - | |
Sed03g2137 | 425 | SMART | cyclin_7 | 213 | 297 | IPR013763 | - | |
Sed03g2137 | 425 | Pfam | Cyclin, C-terminal domain | 306 | 413 | IPR004367 | - | |
Sed03g2137 | 425 | SUPERFAMILY | Cyclin-like | 305 | 415 | IPR036915 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2137 | Sed-Chr3:15528787 | Sed03g2149 | Sed-Chr3:15582286 | 1.00E-231 | dispersed | |
Sed03g2137 | Sed-Chr3:15528787 | Sed03g2138 | Sed-Chr3:15528787 | 6.20E-229 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g2137 | K21777 | - | csv:101217210 | 630.557 |