Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2138 ATGGATTTTTGTTATGGGGAAGGTGAGGTGATGATCGGCGGAGGAAAGCCGGCAAAGGGCGGAGTGGCGCCGGATGCAAGGAACCGCCGCGCATTGGGCGATATTGGGAATCTGGTAACTGTTCGAGGAATTGACGCAAACGTGAATCGCCCTGTTACAAGAAGTTTCTGTGCTCAGTTGCTTGCCAATGCCCAAGCTGATAATAATAATAATAATAATAATAAGAAACAAGTGCTACATGGGGGTGTTGTGGCTGTTAAGAAACCAACAGCTCCCAACCCAGCCCCGAAGAAAGTCGCTGTTGAGGTGATCGAGATAAGTCCGGATACTGTCGAAAAAGATCACGGCAAGAAATCCAAAGGAGAAGGCGTCTCAAAGAACAAGGCTCAGACTCTCACTTCAGTCCTGACAGCTAGAAGCAAGGCTGCTTGTGGTGTAACCAAGAAACCCAAGGAACAAATTTTTGACATAGATGCTGCGGATGTTGGAAATGAGTTGGCAGAAGTTGAATATGTTGAGGACATGTATAAGTTCTACAAGGAAGTTGAGAATGAGAATAGGCCTCATGATTATATGGATTCACAACCTGAAATCAACACTTCAATGAGGGCAATCTTGGTGGATTGGCTGGTTGATGTCCACAACAAGTTTGAACTTTCACTCGAAACCTTCTATCTCACGATCAACATAATCGACCGATTCCTTACAACAAAGGTAGTTCCGAGAAGGGAATTACAGTTGCTTGGTATTGGGGCAATGCTCATAGCCTCAAAATACGAAGAGATCTGGGCACCAGAGGTAAATGACTTTGTGTGCATTTCAGATAGAGCTTACACCAATGAACAGATACTAGTGATGGAGAAAAAGATACTTGGGAAGCTGGAATGGACCTTCACCGTGCCTACACCATATGTTTTCCTTGCTCGATTCATCAAGGCGTCGAAGGACTCTGATCATGAGATGGAAAATCTGGTGTATTTTCTGGGTGAACTTGGGATAATGCATTACAACACCTCAATAATGTACTGCCCATCAATGATTGCTGCCTCAGCAGTCTATGCGGCTCGATGCACGCTGAAGAAAACTCCTGCTTGGGATGACACTCTGAAACTTCACACTGGTTTCTCAGAGCCCCAACTAATTGATTCAAGCAAGAACAAGCTTCAAGTAATATTCCGAAAGTACTCCAGCTCCGACCGGGGAGCGGTTGCCTTGCTTCAGCCAGCCAAAGCTCTATTGGCTCTTAATACAGCTGCTCCTTGA 1263 45.37 MDFCYGEGEVMIGGGKPAKGGVAPDARNRRALGDIGNLVTVRGIDANVNRPVTRSFCAQLLANAQADNNNNNNNKKQVLHGGVVAVKKPTAPNPAPKKVAVEVIEISPDTVEKDHGKKSKGEGVSKNKAQTLTSVLTARSKAACGVTKKPKEQIFDIDAADVGNELAEVEYVEDMYKFYKEVENENRPHDYMDSQPEINTSMRAILVDWLVDVHNKFELSLETFYLTINIIDRFLTTKVVPRRELQLLGIGAMLIASKYEEIWAPEVNDFVCISDRAYTNEQILVMEKKILGKLEWTFTVPTPYVFLARFIKASKDSDHEMENLVYFLGELGIMHYNTSIMYCPSMIAASAVYAARCTLKKTPAWDDTLKLHTGFSEPQLIDSSKNKLQVIFRKYSSSDRGAVALLQPAKALLALNTAAP 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15528787 15530825 - Sed0021002.2 Sed03g2138 707625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2138 420 FunFam G2/mitotic-specific cyclin 187 299 - -
Sed03g2138 420 SUPERFAMILY Cyclin-like 163 297 IPR036915 -
Sed03g2138 420 CDD CYCLIN_AtCycB-like_rpt1 151 296 - -
Sed03g2138 420 Gene3D - 174 404 - -
Sed03g2138 420 PIRSF Cyclin_A_B_D_E 7 419 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Sed03g2138 420 PANTHER CYCLINS 149 396 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed03g2138 420 Gene3D - 188 299 - -
Sed03g2138 420 SUPERFAMILY Cyclin-like 300 410 IPR036915 -
Sed03g2138 420 ProSitePatterns Cyclins signature. 203 234 IPR048258 -
Sed03g2138 420 Pfam Cyclin, C-terminal domain 301 408 IPR004367 -
Sed03g2138 420 SMART Cyclin_C_2 301 409 IPR004367 -
Sed03g2138 420 SMART cyclin_7 305 389 IPR013763 -
Sed03g2138 420 SMART cyclin_7 208 292 IPR013763 -
Sed03g2138 420 Pfam Cyclin, N-terminal domain 174 297 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2138 Sed-Chr3:15528787 Sed03g2149 Sed-Chr3:15582286 2.40E-225 dispersed
Sed03g2137 Sed-Chr3:15528787 Sed03g2138 Sed-Chr3:15528787 6.20E-229 tandem
Sed03g2138 Sed-Chr3:15528787 Sed03g2139 Sed-Chr3:15543519 3.20E-193 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2138 K21777 - csv:101217210 609.372