Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2139 ATGAATTCAAGACCAGAAGTAGTTCCCCTACAAATCAGAGGTGAGGCGATGGTCGGCCGAGGAAAGCTGGAAAAGGGCGGAGTCGTGGCGGCGGATGCAAGGAACCGCCGCGCATTGGGCGATATTGGGAACCTGGTAAGTGTTCGAGGGATTGACGCAAAGGCGAATCGCCCTGTTACGAGAAGTTTCTGTAATGATGGTGGTGTTGTGGCCGTTAAGAAACCAGCAGTTCCCAAGCCAGCGCCTAAGAAAGTTGTTGTCAAACCCTCGAACGTCGAGGTGATCGAGATAAGCCCGGATACGGTTGAAAAAGATCAGGGCAAGAAATCCAAAGGAGAAGGGGTCTCAAAGAACAAGGCTCAGACTCTCACTTCAGTTCTTACTGCTAGAAGCAAGGCTGCTTGTGGTGTAACCAAGAAACCCAAGGAACAAATTTTTGACATAGATGCTGCGGATGTTGGAAATGAGTTGGCAGAAGTTGAATATGTTGAGGACATGTATAAGTTCTACAAGGAAGTTGAGAATGAGAATAGGCCTCATGATTATATGGATTCACAACCTGAAATCAACACTTCAATGAGGGCAATATTGGTGGATTGGCTGGTTGATGTTCACAACAAGTTTGAACTTTCGCTCGAAACTTTCTATCTCACGATTAATCTAATCGATCGGTTCCTTGCGACAAAGGTAGTTCCGAGAAGGGAATTGCAGTTGGTTGGTATTGGGGCAATGCTCATAGCCTCAAAATACGAAGAGATGTGGGCGCCAGAGGTAGATGACTTTGTGTGCATTTCAGATAGTGCTTACACCAACGAACAGATACTAGCGATGGAGAAAAAGATACTTGGGAAGCTGGAATGGACCTTGACTGTGCCTACTCAATATGTTTTCCTAGCTCGATTCATCAAGGCGTCGAAGAACTTCGATCATGAGTTGGAAAATCTGGTATATTTTCTGGGTGAACTTGGGATAATGCATTACAGCACCTCAATTAGCTACTGCCCGTCCATGATTGCTGCCTCGGCAGTCTACGCCGCTCGATGCACGCTGAAGGAAACTCCAGCTTGGGATGAGACTCTGAAACTGCACACTGGTTTCTCCGAGCCTCAACTAGTTGATTGTGCAAAACTTCTGGTGGGATTCCATGGGGTAGCAAGCAAGAACAAGCTTCAAGGAATATTCCGAAAGTACTCCAGCTCCGACCGAGGAGTGGTTGCCTTACTTCAGCCAGCCAAAGCTTTGTTGGCTCTTAATACAGCTGCTCCTTGA 1269 46.89 MNSRPEVVPLQIRGEAMVGRGKLEKGGVVAADARNRRALGDIGNLVSVRGIDAKANRPVTRSFCNDGGVVAVKKPAVPKPAPKKVVVKPSNVEVIEISPDTVEKDQGKKSKGEGVSKNKAQTLTSVLTARSKAACGVTKKPKEQIFDIDAADVGNELAEVEYVEDMYKFYKEVENENRPHDYMDSQPEINTSMRAILVDWLVDVHNKFELSLETFYLTINLIDRFLATKVVPRRELQLVGIGAMLIASKYEEMWAPEVDDFVCISDSAYTNEQILAMEKKILGKLEWTLTVPTQYVFLARFIKASKNFDHELENLVYFLGELGIMHYSTSISYCPSMIAASAVYAARCTLKETPAWDETLKLHTGFSEPQLVDCAKLLVGFHGVASKNKLQGIFRKYSSSDRGVVALLQPAKALLALNTAAP 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15543519 15545490 - Sed0026186.1 Sed03g2139 707626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2139 422 CDD CYCLIN_AtCycB-like_rpt1 142 287 - -
Sed03g2139 422 PIRSF Cyclin_A_B_D_E 4 421 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Sed03g2139 422 Gene3D - 165 406 - -
Sed03g2139 422 SUPERFAMILY Cyclin-like 154 289 IPR036915 -
Sed03g2139 422 PANTHER CYCLINS 140 398 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed03g2139 422 MobiDBLite consensus disorder prediction 98 117 - -
Sed03g2139 422 SMART Cyclin_C_2 292 411 IPR004367 -
Sed03g2139 422 Pfam Cyclin, N-terminal domain 165 289 IPR006671 -
Sed03g2139 422 ProSitePatterns Cyclins signature. 194 225 IPR048258 -
Sed03g2139 422 Gene3D - 179 290 - -
Sed03g2139 422 Pfam Cyclin, C-terminal domain 292 410 IPR004367 -
Sed03g2139 422 MobiDBLite consensus disorder prediction 98 115 - -
Sed03g2139 422 SMART cyclin_7 296 380 IPR013763 -
Sed03g2139 422 SMART cyclin_7 199 283 IPR013763 -
Sed03g2139 422 SUPERFAMILY Cyclin-like 293 413 IPR036915 -
Sed03g2139 422 FunFam G2/mitotic-specific cyclin-1 263 406 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3232 Sed-Chr1:59716035 Sed03g2139 Sed-Chr3:15543519 1.50E-112 dispersed
Sed03g2139 Sed-Chr3:15543519 Sed03g2149 Sed-Chr3:15582286 1.10E-204 dispersed
Sed03g2138 Sed-Chr3:15528787 Sed03g2139 Sed-Chr3:15543519 3.20E-193 tandem
Sed03g2139 Sed-Chr3:15543519 Sed03g2140 Sed-Chr3:15543519 1.10E-230 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2139 K21777 - csv:101217210 620.542