Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2140 ATGGACTTTGTTATGGGGGAAGGTGAGGCGATGGTCGGCCGAGGAAAGCTGGAAAAGGGCGGAGTCGTGGCGGCGGATGCAAGGAACCGCCGCGCATTGGGCGATATTGGGAACCTGGTAAGTGTTCGAGGGATTGACGCAAAGGCGAATCGCCCTGTTACGAGAAGTTTCTGTAATGATGGTGGTGTTGTGGCCGTTAAGAAACCAGCAGTTCCCAAGCCAGCGCCTAAGAAAGTTGTTGTCAAACCCTCGAACGTCGAGGTGATCGAGATAAGCCCGGATACGGTTGAAAAAGATCAGGGCAAGAAATCCAAAGGAGAAGGGGTCTCAAAGAACAAGGCTCAGACTCTCACTTCAGTTCTTACTGCTAGAAGCAAGGCTGCTTGTGGTGTAACCAAGAAACCCAAGGAACAAATTTTTGACATAGATGCTGCGGATGTTGGAAATGAGTTGGCAGAAGTTGAATATGTTGAGGACATGTATAAGTTCTACAAGGAAGTTGAGAATGAGAATAGGCCTCATGATTATATGGATTCACAACCTGAAATCAACACTTCAATGAGGGCAATATTGGTGGATTGGCTGGTTGATGTTCACAACAAGTTTGAACTTTCGCTCGAAACTTTCTATCTCACGATTAATCTAATCGATCGGTTCCTTGCGACAAAGGTAGTTCCGAGAAGGGAATTGCAGTTGGTTGGTATTGGGGCAATGCTCATAGCCTCAAAATACGAAGAGATGTGGGCGCCAGAGGTAGATGACTTTGTGTGCATTTCAGATAGTGCTTACACCAACGAACAGATACTAGCGATGGAGAAAAAGATACTTGGGAAGCTGGAATGGACCTTGACTGTGCCTACTCAATATGTTTTCCTAGCTCGATTCATCAAGGCGTCGAAGAACTTCGATCATGAGTTGGAAAATCTGGTATATTTTCTGGGTGAACTTGGGATAATGCATTACAGCACCTCAATTAGCTACTGCCCGTCCATGATTGCTGCCTCGGCAGTCTACGCCGCTCGATGCACGCTGAAGGAAACTCCAGCTTGGGATGAGACTCTGAAACTGCACACTGGTTTCTCCGAGCCTCAACTAGTTGATTGTGCAAAACTTCTGGTGGGATTCCATGGGGTAGCAAGCAAGAACAAGCTTCAAGGAATATTCCGAAAGTACTCCAGCTCCGACCGAGGAGTGGTTGCCTTACTTCAGCCAGCCAAAGCTTTGTTGGCTCTTAATACAGCTGCTCCTTGA 1251 47.08 MDFVMGEGEAMVGRGKLEKGGVVAADARNRRALGDIGNLVSVRGIDAKANRPVTRSFCNDGGVVAVKKPAVPKPAPKKVVVKPSNVEVIEISPDTVEKDQGKKSKGEGVSKNKAQTLTSVLTARSKAACGVTKKPKEQIFDIDAADVGNELAEVEYVEDMYKFYKEVENENRPHDYMDSQPEINTSMRAILVDWLVDVHNKFELSLETFYLTINLIDRFLATKVVPRRELQLVGIGAMLIASKYEEMWAPEVDDFVCISDSAYTNEQILAMEKKILGKLEWTLTVPTQYVFLARFIKASKNFDHELENLVYFLGELGIMHYSTSISYCPSMIAASAVYAARCTLKETPAWDETLKLHTGFSEPQLVDCAKLLVGFHGVASKNKLQGIFRKYSSSDRGVVALLQPAKALLALNTAAP 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15543519 15545490 - Sed0026186.2 Sed03g2140 707627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2140 416 SMART Cyclin_C_2 286 405 IPR004367 -
Sed03g2140 416 FunFam G2/mitotic-specific cyclin-1 257 400 - -
Sed03g2140 416 Gene3D - 159 400 - -
Sed03g2140 416 MobiDBLite consensus disorder prediction 92 109 - -
Sed03g2140 416 ProSitePatterns Cyclins signature. 188 219 IPR048258 -
Sed03g2140 416 PIRSF Cyclin_A_B_D_E 5 415 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Sed03g2140 416 Gene3D - 173 284 - -
Sed03g2140 416 CDD CYCLIN_AtCycB-like_rpt1 136 281 - -
Sed03g2140 416 PANTHER CYCLINS 134 392 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed03g2140 416 SMART cyclin_7 290 374 IPR013763 -
Sed03g2140 416 SMART cyclin_7 193 277 IPR013763 -
Sed03g2140 416 SUPERFAMILY Cyclin-like 287 407 IPR036915 -
Sed03g2140 416 Pfam Cyclin, N-terminal domain 159 283 IPR006671 -
Sed03g2140 416 Pfam Cyclin, C-terminal domain 286 404 IPR004367 -
Sed03g2140 416 MobiDBLite consensus disorder prediction 92 111 - -
Sed03g2140 416 SUPERFAMILY Cyclin-like 148 283 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2140 Sed-Chr3:15543519 Sed03g2149 Sed-Chr3:15582286 4.10E-201 dispersed
Sed03g2139 Sed-Chr3:15543519 Sed03g2140 Sed-Chr3:15543519 1.10E-230 tandem
Sed03g2140 Sed-Chr3:15543519 Sed03g2141 Sed-Chr3:15548342 7.20E-182 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2140 K21777 - csv:101217210 607.831