Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2141 ATGGCTTCAAGACCAGTAGTTCCCCAACAAATCAGAGTGAAGTGGGGATTGAGGGGATCTTTTGCTATTCGTTTTCTTTCTGTTTCTTTTGTGTTGAATGCATTATTTTGTATGGGAGAAGGAGAGGCGGCGATCGGCGGAGGAAAGCAAGCAAAGGGAGGGCCAGGAGCAGATGGGAGGAACCGCCGAGCATTGGGCGATATTGGGAATCTGGTAACTGTTCGAGGAATTGACACAAAGGCGAATCGCCCCATTACGAGGAGTTTCTGTGCTCAGTTGCTTGCTAATGCTCAAGCTGCTGCAAAAACTGAAAATAAACAAGTGAATGTTCGTGTAGATGGGGCTGCTCCCATTCTTGGTGGTGGTGTTGTGGCGGTTAAGAAACCAGCGCAGAAGAAAGCCGTCGTTAAACCACCATTGAAAGCAGAGGTGATCCCGGATGCTGTCGAGCAAGATCGGGGCAAGGAAGTCAAATGTGCAACCAAGACAAAGGGAGGAGAAGGGGCCTCAAAGAAGAAGGCTCAGACTCTCACTTCAGTCCTTACTGCTAGAAGCAAGGCTGCTTGTGGTGTAACCAAGAAGCCCAAAGAACAGGTTTTTGACATAGATGCTGCAGATGTTGGAAATGAGTTGGCAGAAGTTGAATATGTTGAAGACATTTATAAGTTCTACAAGGAAGTTGAGAATGAGAATAGGTTTCATGATTATATGGATTCACAACCCGAAATCAACACTTCAATGAGGGCAATCTTGGTGGATTGGCTGGTTGATGTCCACAACAAGTTCAAACTTTCGCTCGAAACTTTCTATCTCACGATCAACATAATTGATCGATTCCTTGGGAAAAAGGAAGTTCCAAGAAGGGAATTGCAATTGGTTGGTATTGGGGCAATGCTCATAGCCTCAAAATATGAAGAGATCTGGGCACCAGAGGTAAATGATTTTGTGTTCATTTCAGATAGAGGTTACACCAATGAACAGATACTAGTGATGGAGAAAAAGATACTAGGGAAGCTGGAATGGACCTTGACTGTGCCTACACAGTACGTTTTCCTTGCTCGATTCATCAAGGCGTCGAAGGACTCCGATCACCAGATGGAAAATCTGGTGTATTTTCTGGGTGAACTTGGAATAATGCATTACAAGACCTCAATGATGTACTGCCCATCCATGATTGCCGCCTCGGCAGTCTACGCCGCTCGATGCACGCTGAAGAAAACTCCAGCTTGGGATGAGACTCTGAAACTGCACACTGGTTACTCAGAGCCTCAACTAGTTGATTGTGCAAGTCTTCTGGTGGGATTCCATAGGGTAGCAAGCAAGAACAAGCTTAAAGGAACATTCCGAAAGTACTTGAGCTCGGACCGGGGGGCGGTAGCACTGCTTCAGCCAGCCAAAACTCCTCTGTTGGCTCTTAATGCTGCTGCTAATGCTCATTAA 1440 46.04 MASRPVVPQQIRVKWGLRGSFAIRFLSVSFVLNALFCMGEGEAAIGGGKQAKGGPGADGRNRRALGDIGNLVTVRGIDTKANRPITRSFCAQLLANAQAAAKTENKQVNVRVDGAAPILGGGVVAVKKPAQKKAVVKPPLKAEVIPDAVEQDRGKEVKCATKTKGGEGASKKKAQTLTSVLTARSKAACGVTKKPKEQVFDIDAADVGNELAEVEYVEDIYKFYKEVENENRFHDYMDSQPEINTSMRAILVDWLVDVHNKFKLSLETFYLTINIIDRFLGKKEVPRRELQLVGIGAMLIASKYEEIWAPEVNDFVFISDRGYTNEQILVMEKKILGKLEWTLTVPTQYVFLARFIKASKDSDHQMENLVYFLGELGIMHYKTSMMYCPSMIAASAVYAARCTLKKTPAWDETLKLHTGYSEPQLVDCASLLVGFHRVASKNKLKGTFRKYLSSDRGAVALLQPAKTPLLALNAAANAH 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15548342 15550614 + Sed0011583.1 Sed03g2141 707628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2141 479 Gene3D - 219 460 - -
Sed03g2141 479 SMART cyclin_7 350 434 IPR013763 -
Sed03g2141 479 SMART cyclin_7 253 337 IPR013763 -
Sed03g2141 479 PIRSF Cyclin_A_B_D_E 37 478 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Sed03g2141 479 Pfam Cyclin, N-terminal domain 219 343 IPR006671 -
Sed03g2141 479 SUPERFAMILY Cyclin-like 347 467 IPR036915 -
Sed03g2141 479 SMART Cyclin_C_2 346 465 IPR004367 -
Sed03g2141 479 CDD CYCLIN_AtCycB-like_rpt2 346 464 - -
Sed03g2141 479 SUPERFAMILY Cyclin-like 208 343 IPR036915 -
Sed03g2141 479 CDD CYCLIN_AtCycB-like_rpt1 196 341 - -
Sed03g2141 479 Pfam Cyclin, C-terminal domain 346 464 IPR004367 -
Sed03g2141 479 FunFam G2/mitotic-specific cyclin-1 334 460 - -
Sed03g2141 479 ProSitePatterns Cyclins signature. 248 279 IPR048258 -
Sed03g2141 479 PANTHER CYCLINS 194 440 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed03g2141 479 Gene3D - 233 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2141 Sed-Chr3:15548342 Sed03g2143 Sed-Chr3:15548342 3.80E-211 dispersed
Sed03g2140 Sed-Chr3:15543519 Sed03g2141 Sed-Chr3:15548342 7.20E-182 tandem
Sed03g2141 Sed-Chr3:15548342 Sed03g2142 Sed-Chr3:15548342 1.90E-250 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2141 K21777 - csv:101217210 646.351