Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2142 ATGGCTTCAAGACCAGTAGTTCCCCAACAAATCAGAGGAGAGGCGGCGATCGGCGGAGGAAAGCAAGCAAAGGGAGGGCCAGGAGCAGATGGGAGGAACCGCCGAGCATTGGGCGATATTGGGAATCTGGTAACTGTTCGAGGAATTGACACAAAGGCGAATCGCCCCATTACGAGGAGTTTCTGTGCTCAGTTGCTTGCTAATGCTCAAGCTGCTGCAAAAACTGAAAATAAACAAGTGAATGTTCGTGTAGATGGGGCTGCTCCCATTCTTGGTGGTGGTGTTGTGGCGGTTAAGAAACCAGCGCAGAAGAAAGCCGTCGTTAAACCACCATTGAAAGCAGAGGTGATCCCGGATGCTGTCGAGCAAGATCGGGGCAAGGAAGTCAAATGTGCAACCAAGACAAAGGGAGGAGAAGGGGCCTCAAAGAAGAAGGCTCAGACTCTCACTTCAGTCCTTACTGCTAGAAGCAAGGCTGCTTGTGGTGTAACCAAGAAGCCCAAAGAACAGGTTTTTGACATAGATGCTGCAGATGTTGGAAATGAGTTGGCAGAAGTTGAATATGTTGAAGACATTTATAAGTTCTACAAGGAAGTTGAGAATGAGAATAGGTTTCATGATTATATGGATTCACAACCCGAAATCAACACTTCAATGAGGGCAATCTTGGTGGATTGGCTGGTTGATGTCCACAACAAGTTCAAACTTTCGCTCGAAACTTTCTATCTCACGATCAACATAATTGATCGATTCCTTGGGAAAAAGGAAGTTCCAAGAAGGGAATTGCAATTGGTTGGTATTGGGGCAATGCTCATAGCCTCAAAATATGAAGAGATCTGGGCACCAGAGGTAAATGATTTTGTGTTCATTTCAGATAGAGGTTACACCAATGAACAGATACTAGTGATGGAGAAAAAGATACTAGGGAAGCTGGAATGGACCTTGACTGTGCCTACACAGTACGTTTTCCTTGCTCGATTCATCAAGGCGTCGAAGGACTCCGATCACCAGATGGAAAATCTGGTGTATTTTCTGGGTGAACTTGGAATAATGCATTACAAGACCTCAATGATGTACTGCCCATCCATGATTGCCGCCTCGGCAGTCTACGCCGCTCGATGCACGCTGAAGAAAACTCCAGCTTGGGATGAGACTCTGAAACTGCACACTGGTTACTCAGAGCCTCAACTAGTTGATTGTGCAAGTCTTCTGGTGGGATTCCATAGGGTAGCAAGCAAGAACAAGCTTAAAGGAACATTCCGAAAGTACTTGAGCTCGGACCGGGGGGCGGTAGCACTGCTTCAGCCAGCCAAAACTCCTCTGTTGGCTCTTAATGCTGCTGCTAATGCTCATTAA 1356 46.61 MASRPVVPQQIRGEAAIGGGKQAKGGPGADGRNRRALGDIGNLVTVRGIDTKANRPITRSFCAQLLANAQAAAKTENKQVNVRVDGAAPILGGGVVAVKKPAQKKAVVKPPLKAEVIPDAVEQDRGKEVKCATKTKGGEGASKKKAQTLTSVLTARSKAACGVTKKPKEQVFDIDAADVGNELAEVEYVEDIYKFYKEVENENRFHDYMDSQPEINTSMRAILVDWLVDVHNKFKLSLETFYLTINIIDRFLGKKEVPRRELQLVGIGAMLIASKYEEIWAPEVNDFVFISDRGYTNEQILVMEKKILGKLEWTLTVPTQYVFLARFIKASKDSDHQMENLVYFLGELGIMHYKTSMMYCPSMIAASAVYAARCTLKKTPAWDETLKLHTGYSEPQLVDCASLLVGFHRVASKNKLKGTFRKYLSSDRGAVALLQPAKTPLLALNAAANAH 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15548342 15550614 + Sed0011583.2 Sed03g2142 707629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2142 451 Gene3D - 191 432 - -
Sed03g2142 451 PIRSF Cyclin_A_B_D_E 1 450 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Sed03g2142 451 ProSitePatterns Cyclins signature. 220 251 IPR048258 -
Sed03g2142 451 MobiDBLite consensus disorder prediction 1 34 - -
Sed03g2142 451 PANTHER CYCLINS 166 412 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed03g2142 451 CDD CYCLIN_AtCycB-like_rpt2 318 436 - -
Sed03g2142 451 CDD CYCLIN_AtCycB-like_rpt1 168 313 - -
Sed03g2142 451 SUPERFAMILY Cyclin-like 319 439 IPR036915 -
Sed03g2142 451 Gene3D - 205 316 - -
Sed03g2142 451 Pfam Cyclin, C-terminal domain 318 436 IPR004367 -
Sed03g2142 451 FunFam G2/mitotic-specific cyclin-1 306 432 - -
Sed03g2142 451 SUPERFAMILY Cyclin-like 180 315 IPR036915 -
Sed03g2142 451 SMART Cyclin_C_2 318 437 IPR004367 -
Sed03g2142 451 Pfam Cyclin, N-terminal domain 191 315 IPR006671 -
Sed03g2142 451 SMART cyclin_7 225 309 IPR013763 -
Sed03g2142 451 SMART cyclin_7 322 406 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2142 Sed-Chr3:15548342 Sed14g0043 Sed-Chr14:554566 2.00E-201 dispersed
Sed03g2141 Sed-Chr3:15548342 Sed03g2142 Sed-Chr3:15548342 1.90E-250 tandem
Sed03g2142 Sed-Chr3:15548342 Sed03g2143 Sed-Chr3:15548342 3.60E-211 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2142 K21777 - csv:101217210 661.373