Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2143 ATGCTCAAGCTGCTGCAAAAACTGAAAATGTTAAGGCCTTTTCATATGCCATTCTTTGGATTTTGTTGTCATCTTCATCGTTTTTTAAGGTTGTTAATGTGTTTGGATCTTTGGTGTTCTTTTGTAATGCAGAAACAAGTGAATGTTCGTGTAGATGGGGCTGCTCCCATTCTTGGTGGTGGTGTTGTGGCGGTTAAGAAACCAGCGCAGAAGAAAGCCGTCGTTAAACCACCATTGAAAGCAGAGGTGATCCCGGATGCTGTCGAGCAAGATCGGGGCAAGGAAGTCAAATGTGCAACCAAGACAAAGGGAGGAGAAGGGGCCTCAAAGAAGAAGGCTCAGACTCTCACTTCAGTCCTTACTGCTAGAAGCAAGGCTGCTTGTGGTGTAACCAAGAAGCCCAAAGAACAGGTTTTTGACATAGATGCTGCAGATGTTGGAAATGAGTTGGCAGAAGTTGAATATGTTGAAGACATTTATAAGTTCTACAAGGAAGTTGAGAATGAGAATAGGTTTCATGATTATATGGATTCACAACCCGAAATCAACACTTCAATGAGGGCAATCTTGGTGGATTGGCTGGTTGATGTCCACAACAAGTTCAAACTTTCGCTCGAAACTTTCTATCTCACGATCAACATAATTGATCGATTCCTTGGGAAAAAGGAAGTTCCAAGAAGGGAATTGCAATTGGTTGGTATTGGGGCAATGCTCATAGCCTCAAAATATGAAGAGATCTGGGCACCAGAGGTAAATGATTTTGTGTTCATTTCAGATAGAGGTTACACCAATGAACAGATACTAGTGATGGAGAAAAAGATACTAGGGAAGCTGGAATGGACCTTGACTGTGCCTACACAGTACGTTTTCCTTGCTCGATTCATCAAGGCGTCGAAGGACTCCGATCACCAGATGGAAAATCTGGTGTATTTTCTGGGTGAACTTGGAATAATGCATTACAAGACCTCAATGATGTACTGCCCATCCATGATTGCCGCCTCGGCAGTCTACGCCGCTCGATGCACGCTGAAGAAAACTCCAGCTTGGGATGAGACTCTGAAACTGCACACTGGTTACTCAGAGCCTCAACTAGTTGATTGTGCAAGTCTTCTGGTGGGATTCCATAGGGTAGCAAGCAAGAACAAGCTTAAAGGAACATTCCGAAAGTACTTGAGCTCGGACCGGGGGGCGGTAGCACTGCTTCAGCCAGCCAAAACTCCTCTGTTGGCTCTTAATGCTGCTGCTAATGCTCATTAA 1257 44.39 MLKLLQKLKMLRPFHMPFFGFCCHLHRFLRLLMCLDLWCSFVMQKQVNVRVDGAAPILGGGVVAVKKPAQKKAVVKPPLKAEVIPDAVEQDRGKEVKCATKTKGGEGASKKKAQTLTSVLTARSKAACGVTKKPKEQVFDIDAADVGNELAEVEYVEDIYKFYKEVENENRFHDYMDSQPEINTSMRAILVDWLVDVHNKFKLSLETFYLTINIIDRFLGKKEVPRRELQLVGIGAMLIASKYEEIWAPEVNDFVFISDRGYTNEQILVMEKKILGKLEWTLTVPTQYVFLARFIKASKDSDHQMENLVYFLGELGIMHYKTSMMYCPSMIAASAVYAARCTLKKTPAWDETLKLHTGYSEPQLVDCASLLVGFHRVASKNKLKGTFRKYLSSDRGAVALLQPAKTPLLALNAAANAH 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15548342 15550614 + Sed0011583.3 Sed03g2143 707630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2143 418 SMART cyclin_7 192 276 IPR013763 -
Sed03g2143 418 SMART cyclin_7 289 373 IPR013763 -
Sed03g2143 418 Pfam Cyclin, C-terminal domain 285 403 IPR004367 -
Sed03g2143 418 Gene3D - 158 399 - -
Sed03g2143 418 CDD CYCLIN_AtCycB-like_rpt1 135 280 - -
Sed03g2143 418 FunFam G2/mitotic-specific cyclin-1 273 399 - -
Sed03g2143 418 SUPERFAMILY Cyclin-like 147 282 IPR036915 -
Sed03g2143 418 ProSitePatterns Cyclins signature. 187 218 IPR048258 -
Sed03g2143 418 PIRSF Cyclin_A_B_D_E 41 417 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Sed03g2143 418 PANTHER CYCLINS 133 379 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed03g2143 418 SUPERFAMILY Cyclin-like 286 406 IPR036915 -
Sed03g2143 418 Gene3D - 172 283 - -
Sed03g2143 418 Pfam Cyclin, N-terminal domain 158 282 IPR006671 -
Sed03g2143 418 SMART Cyclin_C_2 285 404 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2141 Sed-Chr3:15548342 Sed03g2143 Sed-Chr3:15548342 3.80E-211 dispersed
Sed03g2143 Sed-Chr3:15548342 Sed14g0044 Sed-Chr14:554566 3.90E-167 dispersed
Sed03g2143 Sed-Chr3:15548342 Sed03g2149 Sed-Chr3:15582286 2.00E-163 proximal
Sed03g2142 Sed-Chr3:15548342 Sed03g2143 Sed-Chr3:15548342 3.60E-211 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2143 K21777 - csv:101217210 559.296