Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g2144 | ATGAGGGAAGAGCACTCGAATTGGTTTTCGAGATGGGAAGATGAGCTTCCATCTCCGGATGAATTGATTTCTCTTTCACAAACCCTAATAACCCCTGATCTTGCTTTGGCTTTTGATATTCAAAATCCCACAAACAGCACTTCGCCCTTGCCTTGCCCGTCTCCGCCGCTTTCCAATCCCCTCCCCGGTTCCGGCAACGGTACTGTCCCTCCCAACTCGGCCGATTTCGCCGATTCGGCCGATTTCGGCAGCGACGAGCCGGCCCGGACCCTTAAGCGCCCGCGCCTCGTCTGGACTCCACAGCTCCATAAGCGGTTTGTGGATGCTGTTGCTCATTTGGGGATAAAGAATGCTGTCCCCAAAACCATTATGCAGCTTATGAGTGTGGATGGCTTGACTAGAGAGAATGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGGATGCAGGGCTTGTCGAGTGGCGGCGGCGGCGGTGCGGGGTTGCTTGCTTCCTCGGATCCGGCTACTGACCATTTGTTTGCTAGCTCCCCTGTTCCACCCCATTTGCTTCACTCTGCGCGTGCCGGTTCTGACCACTTCTTGCCCTTTGTTCCCATGGCGACTCTCCAACAGCACCACCATCACCAGCAGCAGATGGCTTCTGTTGTCGCCCACCCGCAGCTTCAGCCGGCTTATCATCAGCAGGTTGGGCATTTCGGGTCACCGCCGAACAGGCAGTTCGAGCATCCGTTTTTAGCCAGGCAGTCACAACCTATCCATAGAATGGGGACACCAGTCCATAGTTCAGGTCCTAATTACATCGAGGATTTGGAATCAGCCAATGCCAGTGGAGGAAGAAAAGTTCTGACCTTATTTCCAACTGGAGATGATTGA | 882 | 53.85 | MREEHSNWFSRWEDELPSPDELISLSQTLITPDLALAFDIQNPTNSTSPLPCPSPPLSNPLPGSGNGTVPPNSADFADSADFGSDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGGAGLLASSDPATDHLFASSPVPPHLLHSARAGSDHFLPFVPMATLQQHHHHQQQMASVVAHPQLQPAYHQQVGHFGSPPNRQFEHPFLARQSQPIHRMGTPVHSSGPNYIEDLESANASGGRKVLTLFPTGDD | 293 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 15552114 | 15554151 | + | Sed0009024.1 | Sed03g2144 | 707631 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g2144 | 293 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 98 | 149 | IPR017930 | - | |
Sed03g2144 | 293 | SUPERFAMILY | Homeodomain-like | 90 | 150 | IPR009057 | - | |
Sed03g2144 | 293 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 94 | 146 | IPR006447 | GO:0003677(InterPro) | |
Sed03g2144 | 293 | Gene3D | - | 90 | 152 | - | - | |
Sed03g2144 | 293 | Pfam | Myb-like DNA-binding domain | 96 | 145 | IPR001005 | - | |
Sed03g2144 | 293 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 5 | 257 | IPR044841 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g2144 | 293 | MobiDBLite | consensus disorder prediction | 40 | 88 | - | - | |
Sed03g2144 | 293 | FunFam | Two-component response regulator | 89 | 152 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2144 | Sed-Chr3:15552114 | Sed13g1417 | Sed-Chr13:19503532 | 4.50E-37 | dispersed | |
Sed12g1174 | Sed-Chr12:7835665 | Sed03g2144 | Sed-Chr3:15552114 | 2.00E-81 | wgd | |
Sed14g0045 | Sed-Chr14:564554 | Sed03g2144 | Sed-Chr3:15552114 | 4.30E-144 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37919 | PF00249 | Myb_DNA-binding | 2.10E-08 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g2144 | - | - | - | 0.0 |