Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2144 ATGAGGGAAGAGCACTCGAATTGGTTTTCGAGATGGGAAGATGAGCTTCCATCTCCGGATGAATTGATTTCTCTTTCACAAACCCTAATAACCCCTGATCTTGCTTTGGCTTTTGATATTCAAAATCCCACAAACAGCACTTCGCCCTTGCCTTGCCCGTCTCCGCCGCTTTCCAATCCCCTCCCCGGTTCCGGCAACGGTACTGTCCCTCCCAACTCGGCCGATTTCGCCGATTCGGCCGATTTCGGCAGCGACGAGCCGGCCCGGACCCTTAAGCGCCCGCGCCTCGTCTGGACTCCACAGCTCCATAAGCGGTTTGTGGATGCTGTTGCTCATTTGGGGATAAAGAATGCTGTCCCCAAAACCATTATGCAGCTTATGAGTGTGGATGGCTTGACTAGAGAGAATGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGGATGCAGGGCTTGTCGAGTGGCGGCGGCGGCGGTGCGGGGTTGCTTGCTTCCTCGGATCCGGCTACTGACCATTTGTTTGCTAGCTCCCCTGTTCCACCCCATTTGCTTCACTCTGCGCGTGCCGGTTCTGACCACTTCTTGCCCTTTGTTCCCATGGCGACTCTCCAACAGCACCACCATCACCAGCAGCAGATGGCTTCTGTTGTCGCCCACCCGCAGCTTCAGCCGGCTTATCATCAGCAGGTTGGGCATTTCGGGTCACCGCCGAACAGGCAGTTCGAGCATCCGTTTTTAGCCAGGCAGTCACAACCTATCCATAGAATGGGGACACCAGTCCATAGTTCAGGTCCTAATTACATCGAGGATTTGGAATCAGCCAATGCCAGTGGAGGAAGAAAAGTTCTGACCTTATTTCCAACTGGAGATGATTGA 882 53.85 MREEHSNWFSRWEDELPSPDELISLSQTLITPDLALAFDIQNPTNSTSPLPCPSPPLSNPLPGSGNGTVPPNSADFADSADFGSDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGGAGLLASSDPATDHLFASSPVPPHLLHSARAGSDHFLPFVPMATLQQHHHHQQQMASVVAHPQLQPAYHQQVGHFGSPPNRQFEHPFLARQSQPIHRMGTPVHSSGPNYIEDLESANASGGRKVLTLFPTGDD 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15552114 15554151 + Sed0009024.1 Sed03g2144 707631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2144 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 149 IPR017930 -
Sed03g2144 293 SUPERFAMILY Homeodomain-like 90 150 IPR009057 -
Sed03g2144 293 NCBIfam myb-like DNA-binding domain, SHAQKYF class 94 146 IPR006447 GO:0003677(InterPro)
Sed03g2144 293 Gene3D - 90 152 - -
Sed03g2144 293 Pfam Myb-like DNA-binding domain 96 145 IPR001005 -
Sed03g2144 293 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 5 257 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g2144 293 MobiDBLite consensus disorder prediction 40 88 - -
Sed03g2144 293 FunFam Two-component response regulator 89 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2144 Sed-Chr3:15552114 Sed13g1417 Sed-Chr13:19503532 4.50E-37 dispersed
Sed12g1174 Sed-Chr12:7835665 Sed03g2144 Sed-Chr3:15552114 2.00E-81 wgd
Sed14g0045 Sed-Chr14:564554 Sed03g2144 Sed-Chr3:15552114 4.30E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37919 PF00249 Myb_DNA-binding 2.10E-08 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2144 - - - 0.0