Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2149 ATGGCTTCAAGACCAGTAGTTCCCCAACAAATCAAAGGTGAGGTGATGATCGGCGGAGGAAAGCCGGCAAAGGGCGGAGTGGCGCCGGATGCAAGGAACCGCCGCGCATTGGGCGATATTGGGAATCTGGTAACTGTTCGAGGAATTGACGCAAACGTGAATCGCCCTGTTACAAGAAGTTTCTGTGCTCAGTTGCTTGCCAATGCCCAAGCTGATAATAATAATAATAATAATAATAAGAAACAAGTGCTACATGGGGGTGTTGTGGCTGTTAAGAAACCAACAGCTCCCAACCCAGCCCCGAAGAAAGTCGCTGTTGAGGTGATCGAGATAAGTCCGGATACTGTCGAAAAAGATCACGGCAAGAAATCCAAAGGAGAAGGCGTCTCAAAGAACAAGGCTCAGACTCTCACTTCAGTCCTGACAGCTAGAAGCAAGGCTGCTTGTGGTGTAACCAAGAAACCCAAGGAACGAATTTTTGACATAGATGCTGCAGATGTTGGAAATGAGTTGGCGGAAGTTGAATATGTTGAGGACATGTATAAGTTCTACAAGGAAGTTGAGAATGAGAATAGGCCTCATGATTATATGGATTCACAACCTGAAATCAACACTTCAATGAGGGCAATCTTGGTGGATTGGCTGGTTGATGTCCACAACAAGTTTGAACTTTCACTCGAAACCTTCTATCTCACGATCAACATAATCGACCGATTCCTTACAACAAAGGTAGTTCCGAGAAGGGAATTACAGTTGCTTGGTATTGGGGCAATGCTCATAGCCTCAAAATACGAAGAGATCTGGGCACCAGAGGTAAATGACTTTGTGTGCATTTCAGATAGAGCTTACACCAATGAACAGATACTAGTGATGGAGAAAAAGATACTTGGGAAGCTGGAATGGACCTTCACCGTGCCTACACCATATGTTTTCCTTGCTCGATTCATCAAGGCGTCGAAGGACTCTGATCATGAGATGGAAAATCTGGTGTATTTTCTGGGTGAACTTGGGATAATGCATTACAACACCTCAATAATGTACTGCCCATCAATGATTGCTGCCTCAGCAGTCTATGCCGCTCGATGCACGCTGAAGAAAACTCCTGCTTGGGATGACACTCTGAAACTTCACACTGGTTTCTCAGAGCCCCAACTAATTGATTGTGCAAAACTTCTGGTGGGATTTCATGGGGTAGCAAGCAAGAACAAGCTTCAAGTAATATTCCGAAAGTACTCCAGCTCCGACCGGGGAGCGGTTGCCTTGCTTCAGCCAGCCAAAGCTCTATTGGCTCTTAGTACAGCTGCTCCTTGA 1311 45.69 MASRPVVPQQIKGEVMIGGGKPAKGGVAPDARNRRALGDIGNLVTVRGIDANVNRPVTRSFCAQLLANAQADNNNNNNNKKQVLHGGVVAVKKPTAPNPAPKKVAVEVIEISPDTVEKDHGKKSKGEGVSKNKAQTLTSVLTARSKAACGVTKKPKERIFDIDAADVGNELAEVEYVEDMYKFYKEVENENRPHDYMDSQPEINTSMRAILVDWLVDVHNKFELSLETFYLTINIIDRFLTTKVVPRRELQLLGIGAMLIASKYEEIWAPEVNDFVCISDRAYTNEQILVMEKKILGKLEWTFTVPTPYVFLARFIKASKDSDHEMENLVYFLGELGIMHYNTSIMYCPSMIAASAVYAARCTLKKTPAWDDTLKLHTGFSEPQLIDCAKLLVGFHGVASKNKLQVIFRKYSSSDRGAVALLQPAKALLALSTAAP 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15582286 15584696 + Sed0009841.1 Sed03g2149 707636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2149 436 FunFam G2/mitotic-specific cyclin-1 294 420 - -
Sed03g2149 436 SMART Cyclin_C_2 306 425 IPR004367 -
Sed03g2149 436 ProSitePatterns Cyclins signature. 208 239 IPR048258 -
Sed03g2149 436 SUPERFAMILY Cyclin-like 307 427 IPR036915 -
Sed03g2149 436 SUPERFAMILY Cyclin-like 168 302 IPR036915 -
Sed03g2149 436 Pfam Cyclin, N-terminal domain 179 302 IPR006671 -
Sed03g2149 436 Gene3D - 193 304 - -
Sed03g2149 436 PANTHER CYCLINS 155 412 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed03g2149 436 SMART cyclin_7 310 394 IPR013763 -
Sed03g2149 436 SMART cyclin_7 213 297 IPR013763 -
Sed03g2149 436 CDD CYCLIN_AtCycB-like_rpt1 156 301 - -
Sed03g2149 436 CDD CYCLIN_AtCycB-like_rpt2 306 424 - -
Sed03g2149 436 PIRSF Cyclin_A_B_D_E 2 435 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Sed03g2149 436 Gene3D - 179 420 - -
Sed03g2149 436 Pfam Cyclin, C-terminal domain 306 424 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2137 Sed-Chr3:15528787 Sed03g2149 Sed-Chr3:15582286 1.00E-231 dispersed
Sed03g2138 Sed-Chr3:15528787 Sed03g2149 Sed-Chr3:15582286 2.40E-225 dispersed
Sed03g2139 Sed-Chr3:15543519 Sed03g2149 Sed-Chr3:15582286 1.10E-204 dispersed
Sed03g2140 Sed-Chr3:15543519 Sed03g2149 Sed-Chr3:15582286 4.10E-201 dispersed
Sed03g2149 Sed-Chr3:15582286 Sed14g0044 Sed-Chr14:554566 1.30E-170 dispersed
Sed03g2143 Sed-Chr3:15548342 Sed03g2149 Sed-Chr3:15582286 2.00E-163 proximal
Sed01g3232 Sed-Chr1:59716035 Sed03g2149 Sed-Chr3:15582286 8.10E-114 transposed
Sed14g0043 Sed-Chr14:554566 Sed03g2149 Sed-Chr3:15582286 1.20E-198 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2149 K21777 - csv:101217210 659.062