Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2174 ATGGGCTCTTCTGTTGCTCCAATGAGCATGGTCTCCGACTCCAAATTCCACGTTCTCGCTGTTGATGACAGCGTTATTGACCGAAAATTAATCGAACACCTCCTTAAAACCTCCTCTTTTCAAGTTACTGCGGTTGATTCTGGGAGTAAGGCGTTGGAGTTTTTGGGATATGACCACTATCATCATCATCATCAGGAGCTGGATGTGAATCTTGTGATTACTGATTACTGTATGCCTGGGATGACTGGGTATGATTTGTTGAAGAAGATCAAGGGATCTAAAGCTCTGAAAAACATTCCTGTTGTTATTATGTCATCTGAGAATGAACCTGCAAGAATCAGTAGATGTTTAGAAGAAGGAGCCGAAGAATTCTTCTTGAAACCGGTCCGACTTTCGGATGTCACCAAGCTTAGACCCCACATGTTGAAAACTAAACTCAAATGTAACAAACCAGAAAGAACAAAAGAAGATGAGCCTGATTCAGGAAGCCGATCCCAAACACTAGAAGGCCAACGACAACATGAACAAGATGAACAAGAACAGTTACAATCGCAACCACAACCGCAACCGCTGGTCCCAACACTGCTGCAAGATCAAGATCAATTGCAATGCATACCATTGTTACCAACTCCACAACAGGAGCAAGAACAATTGCAATTACTCCCACCAACGCCGCCGCAACAATCGAACAACAACAAGAGGAAGGCAATGGAAGATAGTCTTTCACCCGATAGAACAAGGCCTAGATACAATGGTATTACAACCATGGTGTAG 774 43.28 MGSSVAPMSMVSDSKFHVLAVDDSVIDRKLIEHLLKTSSFQVTAVDSGSKALEFLGYDHYHHHHQELDVNLVITDYCMPGMTGYDLLKKIKGSKALKNIPVVIMSSENEPARISRCLEEGAEEFFLKPVRLSDVTKLRPHMLKTKLKCNKPERTKEDEPDSGSRSQTLEGQRQHEQDEQEQLQSQPQPQPLVPTLLQDQDQLQCIPLLPTPQQEQEQLQLLPPTPPQQSNNNKRKAMEDSLSPDRTRPRYNGITTMV 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15982439 15984283 + Sed0004828.1 Sed03g2174 707661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2174 257 Gene3D - 17 243 - -
Sed03g2174 257 Pfam Response regulator receiver domain 18 135 IPR001789 GO:0000160(InterPro)
Sed03g2174 257 MobiDBLite consensus disorder prediction 213 257 - -
Sed03g2174 257 SMART REC_2 16 138 IPR001789 GO:0000160(InterPro)
Sed03g2174 257 CDD REC_typeA_ARR 18 137 - -
Sed03g2174 257 MobiDBLite consensus disorder prediction 213 236 - -
Sed03g2174 257 SUPERFAMILY CheY-like 14 143 IPR011006 -
Sed03g2174 257 ProSiteProfiles Response regulatory domain profile. 17 142 IPR001789 GO:0000160(InterPro)
Sed03g2174 257 Coils Coil 165 185 - -
Sed03g2174 257 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 205 IPR045279 GO:0009736(InterPro)
Sed03g2174 257 MobiDBLite consensus disorder prediction 142 163 - -
Sed03g2174 257 MobiDBLite consensus disorder prediction 142 192 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2174 Sed-Chr3:15982439 Sed14g0017 Sed-Chr14:230191 3.30E-84 dispersed
Sed03g2174 Sed-Chr3:15982439 Sed03g2175 Sed-Chr3:15982439 1.30E-67 tandem
Sed02g0819 Sed-Chr2:45861278 Sed03g2174 Sed-Chr3:15982439 2.50E-56 transposed
Sed04g2967 Sed-Chr4:41094912 Sed03g2174 Sed-Chr3:15982439 1.80E-39 transposed
Sed14g0016 Sed-Chr14:229095 Sed03g2174 Sed-Chr3:15982439 1.70E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37921 PF00072 Response_reg 6.50E-22 CL0304 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2174 K14492 - csv:101220999 341.658