Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2210 ATGGTGGATAGAAGAGGGGAAGTGGTGGCGAGGTTGAAGGCTTTGGAGGAGTCTGCTGCGCCACTTGTTTCTTTTCTGCAGAATCCGGCTGCTGTTCAGGAACTGAGGGCTGATAAGCAGTACAACCTTCAAATGCTTAATGAACGCTATCAGATTGGTCCAGATCAAATCGAAGCATTATACCAGTATGCCAAATTTCAGTTCGAGTGCGGGAACTATTCTGGTGCTGCTGACTATCTTTATCAGTACAGAGCCTTATGCACTAACAGTGAAAGGAGCCTGAGTGCTCTATGGGGAAAGTTGGCTGCTGAGATTTTAATGCAGAACTGGGATATTGCTGTTGAAGAGCTTAATCGGCTAAAGGAAATTATTGACTCTAAGAATTTCTCATCACCTATGAACCAAGTGCAAAGTAGAATATGGTTGATGCATTGGAGCCTTTTCATTTTTTTCAATCACGACAATGGAAGAACACAGATTATTGACCTGTTTAATCAAGACAAGTATTTAAATGCCATTCAAACCAATGCTCCCCAACTGTTACGCTATTTGGCCACCGCATTCATTGTTAACAAAAGGAGGAGGCCACAATTCAAAGATTTCATCAAGGTTATTCAGCAAGAACAGAATTCCTATAAGGATCCCATCACAGAGTTTTTGACTTGTGTGTATGTCAATTATGATTTTGATGGGGCACAAAAGAAAATGAGGGAGTGTGAAGAAGTTATATTGAATGATCCTTTCCTAGGAAAGAGGCTTGAAGAAGGAAACCTTTCCACTGTTCCTTTGAGAGACGAGTTTTTGGAAAATGCTCGGCTCTTTATCTTTGAGACTTACTGCAGAATACATCAGTGCATTGATATGAGTGTCCTTGCCGAGAAGTTGAACTTGAACTATGAGGAAGCAGAGAGGTGGATTGTAAATCTCGTACGAACGTCAAAGCTGGATGCCAAGATTGATTCAAAGACGGGAACGGTTATAATGGAACCGAACCAGCCTAATGTGTACGAGCAACTGATCGACCACACCAAGTCATTATCCGGGCGTACTTACAAGTTAGTGACTCAACTTCTAGAGCATGCACAGGCTCAATCAGCTAGATAA 1104 41.94 MVDRRGEVVARLKALEESAAPLVSFLQNPAAVQELRADKQYNLQMLNERYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEILMQNWDIAVEELNRLKEIIDSKNFSSPMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPQLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYDFDGAQKKMRECEEVILNDPFLGKRLEEGNLSTVPLRDEFLENARLFIFETYCRIHQCIDMSVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGTVIMEPNQPNVYEQLIDHTKSLSGRTYKLVTQLLEHAQAQSAR 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16424182 16429751 - Sed0005407.2 Sed03g2210 707697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2210 367 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 1 359 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Sed03g2210 367 SUPERFAMILY Winged helix DNA-binding domain 263 334 IPR036390 -
Sed03g2210 367 Pfam PCI domain 236 329 IPR000717 -
Sed03g2210 367 CDD eIF3E 1 359 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Sed03g2210 367 FunFam Eukaryotic translation initiation factor 3 subunit E 158 363 - -
Sed03g2210 367 ProSiteProfiles PCI domain profile. 149 333 IPR000717 -
Sed03g2210 367 SUPERFAMILY TPR-like 50 123 IPR011990 GO:0005515(InterPro)
Sed03g2210 367 Pfam eIF3 subunit 6 N terminal domain 2 67 IPR019010 -
Sed03g2210 367 PIRSF Transl_init_eIF3e 1 367 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Sed03g2210 367 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 364 IPR016650 GO:0003743(InterPro)|GO:0005634(PANTHER)|GO:0005737(InterPro)|GO:0005852(PANTHER)|GO:0005852(InterPro)|GO:0006413(PANTHER)
Sed03g2210 367 Gene3D - 63 363 - -
Sed03g2210 367 SMART eIF3_N_2 1 67 IPR019010 -
Sed03g2210 367 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 262 346 IPR000717 -
Sed03g2210 367 Pfam Eukaryotic translation initiation factor 3 subunit E, C-terminal 334 354 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2210 Sed-Chr3:16424182 Sed14g0127 Sed-Chr14:1411502 7.20E-133 dispersed
Sed03g2209 Sed-Chr3:16424182 Sed03g2210 Sed-Chr3:16424182 6.40E-213 tandem
Sed03g2210 Sed-Chr3:16424182 Sed03g2211 Sed-Chr3:16424182 7.40E-138 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2210 K03250 - csv:101205199 716.457