Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g2210 | ATGGTGGATAGAAGAGGGGAAGTGGTGGCGAGGTTGAAGGCTTTGGAGGAGTCTGCTGCGCCACTTGTTTCTTTTCTGCAGAATCCGGCTGCTGTTCAGGAACTGAGGGCTGATAAGCAGTACAACCTTCAAATGCTTAATGAACGCTATCAGATTGGTCCAGATCAAATCGAAGCATTATACCAGTATGCCAAATTTCAGTTCGAGTGCGGGAACTATTCTGGTGCTGCTGACTATCTTTATCAGTACAGAGCCTTATGCACTAACAGTGAAAGGAGCCTGAGTGCTCTATGGGGAAAGTTGGCTGCTGAGATTTTAATGCAGAACTGGGATATTGCTGTTGAAGAGCTTAATCGGCTAAAGGAAATTATTGACTCTAAGAATTTCTCATCACCTATGAACCAAGTGCAAAGTAGAATATGGTTGATGCATTGGAGCCTTTTCATTTTTTTCAATCACGACAATGGAAGAACACAGATTATTGACCTGTTTAATCAAGACAAGTATTTAAATGCCATTCAAACCAATGCTCCCCAACTGTTACGCTATTTGGCCACCGCATTCATTGTTAACAAAAGGAGGAGGCCACAATTCAAAGATTTCATCAAGGTTATTCAGCAAGAACAGAATTCCTATAAGGATCCCATCACAGAGTTTTTGACTTGTGTGTATGTCAATTATGATTTTGATGGGGCACAAAAGAAAATGAGGGAGTGTGAAGAAGTTATATTGAATGATCCTTTCCTAGGAAAGAGGCTTGAAGAAGGAAACCTTTCCACTGTTCCTTTGAGAGACGAGTTTTTGGAAAATGCTCGGCTCTTTATCTTTGAGACTTACTGCAGAATACATCAGTGCATTGATATGAGTGTCCTTGCCGAGAAGTTGAACTTGAACTATGAGGAAGCAGAGAGGTGGATTGTAAATCTCGTACGAACGTCAAAGCTGGATGCCAAGATTGATTCAAAGACGGGAACGGTTATAATGGAACCGAACCAGCCTAATGTGTACGAGCAACTGATCGACCACACCAAGTCATTATCCGGGCGTACTTACAAGTTAGTGACTCAACTTCTAGAGCATGCACAGGCTCAATCAGCTAGATAA | 1104 | 41.94 | MVDRRGEVVARLKALEESAAPLVSFLQNPAAVQELRADKQYNLQMLNERYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEILMQNWDIAVEELNRLKEIIDSKNFSSPMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPQLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYDFDGAQKKMRECEEVILNDPFLGKRLEEGNLSTVPLRDEFLENARLFIFETYCRIHQCIDMSVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGTVIMEPNQPNVYEQLIDHTKSLSGRTYKLVTQLLEHAQAQSAR | 367 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 16424182 | 16429751 | - | Sed0005407.2 | Sed03g2210 | 707697 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g2210 | 367 | Hamap | Eukaryotic translation initiation factor 3 subunit E [EIF3E]. | 1 | 359 | IPR016650 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
Sed03g2210 | 367 | SUPERFAMILY | Winged helix DNA-binding domain | 263 | 334 | IPR036390 | - | |
Sed03g2210 | 367 | Pfam | PCI domain | 236 | 329 | IPR000717 | - | |
Sed03g2210 | 367 | CDD | eIF3E | 1 | 359 | IPR016650 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
Sed03g2210 | 367 | FunFam | Eukaryotic translation initiation factor 3 subunit E | 158 | 363 | - | - | |
Sed03g2210 | 367 | ProSiteProfiles | PCI domain profile. | 149 | 333 | IPR000717 | - | |
Sed03g2210 | 367 | SUPERFAMILY | TPR-like | 50 | 123 | IPR011990 | GO:0005515(InterPro) | |
Sed03g2210 | 367 | Pfam | eIF3 subunit 6 N terminal domain | 2 | 67 | IPR019010 | - | |
Sed03g2210 | 367 | PIRSF | Transl_init_eIF3e | 1 | 367 | IPR016650 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
Sed03g2210 | 367 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E | 1 | 364 | IPR016650 | GO:0003743(InterPro)|GO:0005634(PANTHER)|GO:0005737(InterPro)|GO:0005852(PANTHER)|GO:0005852(InterPro)|GO:0006413(PANTHER) | |
Sed03g2210 | 367 | Gene3D | - | 63 | 363 | - | - | |
Sed03g2210 | 367 | SMART | eIF3_N_2 | 1 | 67 | IPR019010 | - | |
Sed03g2210 | 367 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 262 | 346 | IPR000717 | - | |
Sed03g2210 | 367 | Pfam | Eukaryotic translation initiation factor 3 subunit E, C-terminal | 334 | 354 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2210 | Sed-Chr3:16424182 | Sed14g0127 | Sed-Chr14:1411502 | 7.20E-133 | dispersed | |
Sed03g2209 | Sed-Chr3:16424182 | Sed03g2210 | Sed-Chr3:16424182 | 6.40E-213 | tandem | |
Sed03g2210 | Sed-Chr3:16424182 | Sed03g2211 | Sed-Chr3:16424182 | 7.40E-138 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g2210 | K03250 | - | csv:101205199 | 716.457 |