Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g2211 | ATGGCAGACTACGATCTAACTCCCCGAATCGCTCCCAATCTGGACCGCCATCTTGTTTTCCCTCTTCTCGAGTTTCTTCAAGAGAGCCAGCTTTACCCCGATGAGCAGATTCTCAAGGCCAAGATCGAGCTTCTCAACAAGACCAACATGGTTGATTACGCCATGGACATCCACAAGTCGCTGTACCACACGGAAGATGTTCCTCAAGATATGGTGGATAGAAGAGGGGAAGTGGTGGCGAGGTTGAAGGCTTTGGAGGAGTCTGCTGCGCCACTTGTTTCTTTTCTGCAGAATCCGGCTGCTGTTCAGGAACTGAGGGCTGATAAGCAGTACAACCTTCAAATGCTTAATGAACGCTATCAGATTGGTCCAGATCAAATCGAAGCATTATACCAGTATGCCAAATTTCAGTTCGAGTGCGGGAACTATTCTGGTGCTGCTGACTATCTTTATCAGTACAGAGCCTTATGCACTAACAGTGAAAGGAGCCTGAGTGCTCTATGGGGAAAGTTGGCTGCTGAGATTTTAATGCAGAACTGGGATATTGCTGTTGAAGAGCTTAATCGGCTAAAGGAAATTATTGACTCTAAGAATTTCTCATCACCTATGAACCAAGTGCAAAGTAGAATATGGTTGATGCATTGGAGCCTTTTCATTTTTTTCAATCACGACAATGGAAGAACACAGATTATTGACCTGTTTAATCAAGACAAGTATTTAAATGCCATTCAAACCAATGCTCCCCAACTGTTACGCTATTTGGCCACCGCATTCATTGTTAACAAAAGGAGGAGGCCACAATTCAAAGATTTCATCAAGGTTATTCAGCAAGAACAGAATTCCTATAAGGATCCCATCACAGAGTTTTTGACTTGTGTGTATGTCAATTATGATTTTGATGGGGCACAAAAGAAAATGAGGGAGTGTGAAGAAACGTGGCTTCCTGCTACTGTTTTGGCGGTTTGGTTACCAAGTCTTATTTGGTCGTTTGCCTAG | 996 | 43.47 | MADYDLTPRIAPNLDRHLVFPLLEFLQESQLYPDEQILKAKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVDRRGEVVARLKALEESAAPLVSFLQNPAAVQELRADKQYNLQMLNERYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEILMQNWDIAVEELNRLKEIIDSKNFSSPMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPQLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYDFDGAQKKMRECEETWLPATVLAVWLPSLIWSFA | 331 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 16424182 | 16429751 | - | Sed0005407.3 | Sed03g2211 | 707698 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g2211 | 331 | SUPERFAMILY | TPR-like | 120 | 193 | IPR011990 | GO:0005515(InterPro) | |
Sed03g2211 | 331 | Pfam | eIF3 subunit 6 N terminal domain | 5 | 137 | IPR019010 | - | |
Sed03g2211 | 331 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E | 1 | 312 | IPR016650 | GO:0003743(InterPro)|GO:0005634(PANTHER)|GO:0005737(InterPro)|GO:0005852(PANTHER)|GO:0005852(InterPro)|GO:0006413(PANTHER) | |
Sed03g2211 | 331 | SMART | eIF3_N_2 | 5 | 137 | IPR019010 | - | |
Sed03g2211 | 331 | CDD | eIF3E | 4 | 311 | IPR016650 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
Sed03g2211 | 331 | PIRSF | Transl_init_eIF3e | 1 | 326 | IPR016650 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
Sed03g2211 | 331 | Hamap | Eukaryotic translation initiation factor 3 subunit E [EIF3E]. | 2 | 328 | IPR016650 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2209 | Sed-Chr3:16424182 | Sed03g2211 | Sed-Chr3:16424182 | 1.90E-180 | dispersed | |
Sed03g2211 | Sed-Chr3:16424182 | Sed14g0127 | Sed-Chr14:1411502 | 1.30E-72 | dispersed | |
Sed03g2210 | Sed-Chr3:16424182 | Sed03g2211 | Sed-Chr3:16424182 | 7.40E-138 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g2211 | K03250 | - | csv:101205199 | 621.698 |