Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2211 ATGGCAGACTACGATCTAACTCCCCGAATCGCTCCCAATCTGGACCGCCATCTTGTTTTCCCTCTTCTCGAGTTTCTTCAAGAGAGCCAGCTTTACCCCGATGAGCAGATTCTCAAGGCCAAGATCGAGCTTCTCAACAAGACCAACATGGTTGATTACGCCATGGACATCCACAAGTCGCTGTACCACACGGAAGATGTTCCTCAAGATATGGTGGATAGAAGAGGGGAAGTGGTGGCGAGGTTGAAGGCTTTGGAGGAGTCTGCTGCGCCACTTGTTTCTTTTCTGCAGAATCCGGCTGCTGTTCAGGAACTGAGGGCTGATAAGCAGTACAACCTTCAAATGCTTAATGAACGCTATCAGATTGGTCCAGATCAAATCGAAGCATTATACCAGTATGCCAAATTTCAGTTCGAGTGCGGGAACTATTCTGGTGCTGCTGACTATCTTTATCAGTACAGAGCCTTATGCACTAACAGTGAAAGGAGCCTGAGTGCTCTATGGGGAAAGTTGGCTGCTGAGATTTTAATGCAGAACTGGGATATTGCTGTTGAAGAGCTTAATCGGCTAAAGGAAATTATTGACTCTAAGAATTTCTCATCACCTATGAACCAAGTGCAAAGTAGAATATGGTTGATGCATTGGAGCCTTTTCATTTTTTTCAATCACGACAATGGAAGAACACAGATTATTGACCTGTTTAATCAAGACAAGTATTTAAATGCCATTCAAACCAATGCTCCCCAACTGTTACGCTATTTGGCCACCGCATTCATTGTTAACAAAAGGAGGAGGCCACAATTCAAAGATTTCATCAAGGTTATTCAGCAAGAACAGAATTCCTATAAGGATCCCATCACAGAGTTTTTGACTTGTGTGTATGTCAATTATGATTTTGATGGGGCACAAAAGAAAATGAGGGAGTGTGAAGAAACGTGGCTTCCTGCTACTGTTTTGGCGGTTTGGTTACCAAGTCTTATTTGGTCGTTTGCCTAG 996 43.47 MADYDLTPRIAPNLDRHLVFPLLEFLQESQLYPDEQILKAKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVDRRGEVVARLKALEESAAPLVSFLQNPAAVQELRADKQYNLQMLNERYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEILMQNWDIAVEELNRLKEIIDSKNFSSPMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPQLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYDFDGAQKKMRECEETWLPATVLAVWLPSLIWSFA 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16424182 16429751 - Sed0005407.3 Sed03g2211 707698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2211 331 SUPERFAMILY TPR-like 120 193 IPR011990 GO:0005515(InterPro)
Sed03g2211 331 Pfam eIF3 subunit 6 N terminal domain 5 137 IPR019010 -
Sed03g2211 331 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 312 IPR016650 GO:0003743(InterPro)|GO:0005634(PANTHER)|GO:0005737(InterPro)|GO:0005852(PANTHER)|GO:0005852(InterPro)|GO:0006413(PANTHER)
Sed03g2211 331 SMART eIF3_N_2 5 137 IPR019010 -
Sed03g2211 331 CDD eIF3E 4 311 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Sed03g2211 331 PIRSF Transl_init_eIF3e 1 326 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Sed03g2211 331 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 328 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2209 Sed-Chr3:16424182 Sed03g2211 Sed-Chr3:16424182 1.90E-180 dispersed
Sed03g2211 Sed-Chr3:16424182 Sed14g0127 Sed-Chr14:1411502 1.30E-72 dispersed
Sed03g2210 Sed-Chr3:16424182 Sed03g2211 Sed-Chr3:16424182 7.40E-138 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2211 K03250 - csv:101205199 621.698