Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2216 ATGGAGACTAAACCCATTGAGATCAGTAAGTCAAAGATGTTTGGAGGGTACAACAGAAGATACCGCCATTACAGCCCAACTCTCGGCTGCTACATGAAATTCCACATCTACTTCCCTCCTTCTTCCCCTTCACACAAATTTCCGGTAATGTACTGGCTCACTGGCCTTGGTTGTACGGATGCGAATTTTATACTTAAGTACGGGGGTCAACGCACTGCTTCTAGTGAAGGTGTTGCATTAATTGTACCTGATACATCTCCAAGAGGCTTGAATGTTGAAGGAGAGGCCGACTATTGGAATCTTGGTGTCGGTGCTGGATTTTTTATCAATGCTACACAAGAAAAATGGAAAAATTGGCGTATGTATGATTATGTTGTCGAAGAGCTACCCAAACTTCTCAGTGAGAATTTTCCGCAACTTGATACATCTCGGGCATCTATATCGGGCCACTCTATGGGTGGACATGGGGCTCTAATAATCTACCTCAAAAACATGAACAAGTATAAGTCAGTATCTGCCTTAGCACCCCTTTACAATCCTATAAACAATCCCTTGTGCCAGAGGGCATTCACGAATTATTTAGGTAGCAACAAAGCTGACTGGGAGGAATACGATGCTTCTCATCTAATTTTAAAGTGCCACAATATATCTGCTACCATTTTTATTGATCAGGGGGATGATGATGAACACTTACATACAGAGTTGCTACCACGCAAGTTTCTAGAGGGCTGCAAGACTGTGAATGCTCCACTCCTCTTGAGGATGCAACCAGGTTACGATCACTCTAAAGATTTTGTTTCTACCTTCATTGAAGATCACATCCGTCACCATTCTCGAGCTCTTAGGCTTCCTTCAAGCTTGTAA 864 42.82 METKPIEISKSKMFGGYNRRYRHYSPTLGCYMKFHIYFPPSSPSHKFPVMYWLTGLGCTDANFILKYGGQRTASSEGVALIVPDTSPRGLNVEGEADYWNLGVGAGFFINATQEKWKNWRMYDYVVEELPKLLSENFPQLDTSRASISGHSMGGHGALIIYLKNMNKYKSVSALAPLYNPINNPLCQRAFTNYLGSNKADWEEYDASHLILKCHNISATIFIDQGDDDEHLHTELLPRKFLEGCKTVNAPLLLRMQPGYDHSKDFVSTFIEDHIRHHSRALRLPSSL 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16517485 16537579 - Sed0024564.1 Sed03g2216 707703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2216 287 Gene3D alpha/beta hydrolase 7 284 IPR029058 -
Sed03g2216 287 PANTHER S-FORMYLGLUTATHIONE HYDROLASE 4 282 IPR014186 GO:0005829(PANTHER)|GO:0018738(PANTHER)|GO:0018738(InterPro)|GO:0046294(InterPro)
Sed03g2216 287 Pfam Putative esterase 25 275 IPR000801 -
Sed03g2216 287 FunFam S-formylglutathione hydrolase 6 283 - -
Sed03g2216 287 NCBIfam S-formylglutathione hydrolase 8 281 IPR014186 GO:0018738(InterPro)|GO:0046294(InterPro)
Sed03g2216 287 SUPERFAMILY alpha/beta-Hydrolases 8 281 IPR029058 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2216 Sed-Chr3:16517485 Sed03g2218 Sed-Chr3:16538911 4.60E-143 dispersed
Sed03g2216 Sed-Chr3:16517485 Sed03g2217 Sed-Chr3:16517485 4.60E-159 tandem
Sed14g0130 Sed-Chr14:1452632 Sed03g2216 Sed-Chr3:16517485 3.50E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2216 K01070 - csv:101207741 471.085