Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2264 ATGGAGAAAATACTCGAACGATACGAGCGATATTCGTACGTAGGCATGCAACAAAATGCAGCTTTGGAATCTGATTTTTCTCGAGAAAATTGGACTCTCGATTATTACAGACTGAAATCGAAAGTCGAACTTCTACAACGAAACAATAGTCATTATATGGGAGAAGATTTGAATTCATTGACTGTTAAAGAACTGCAAAACTTGGAGCAACAAATTGACACTGCACTGACTCATGTTCGTTCGAGAAAAAACCAAGTTCTTTATGATTCCATCTCTGCACTTCAGAGAAAGGAAAGAGCAATACAGGAACAAAATGCCCTGTTGTCAAAGCAGATAAAGGAGAAGGAGAAAAGTGAAGCAATGGCTCAGCAGGCAGAATGGGAGCAGCAGCAACATCATGGCTACAATGCATTGTCTTTCTTATTCCCATCAGCTCCTCATCCCTCTCTAAACATTGGGCTTTCGAGTTTTGATGGTCACATTTGA 486 40.12 MEKILERYERYSYVGMQQNAALESDFSRENWTLDYYRLKSKVELLQRNNSHYMGEDLNSLTVKELQNLEQQIDTALTHVRSRKNQVLYDSISALQRKERAIQEQNALLSKQIKEKEKSEAMAQQAEWEQQQHHGYNALSFLFPSAPHPSLNIGLSSFDGHI 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17047813 17049841 + Sed0026138.1 Sed03g2264 707751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2264 161 Coils Coil 91 130 - -
Sed03g2264 161 Pfam K-box region 27 112 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed03g2264 161 Coils Coil 65 85 - -
Sed03g2264 161 ProSiteProfiles K-box domain profile. 28 118 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed03g2264 161 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 133 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2264 Sed-Chr3:17047813 Sed08g2135 Sed-Chr8:35345567 4.70E-36 dispersed
Sed03g2264 Sed-Chr3:17047813 Sed04g0084 Sed-Chr4:498590 6.70E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2264 K09264 - csv:101219414 257.684