Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g2273 | ATGAGAACGGGGAAAAGCAATCAAGAAGACGAAGAGTACGAGGAGGACGAGCTGGTTGCCAAAAGAGAGGGGCCGGCTTATACTTTTAACGCCAATACTAGCATCGGAAACACCAAAGATGTGAAGAACAATGATAAAGCTAATGCCATACGGTCGAAGCACTCTGTCACAGAACAACGCAGAAGAAGCAAGATTAATGAGAGATTCCAGACTTTGAGAGATCTTATACCTCACAGCGACCAAAAGAGAGATACCGCATCGTTTTTATTGGAGGTGATCGAGTATGTACATTATTTACAGGAAAAGGTGCAAAAGTACGAGGGTTCATATCAGAATTGGAGCGGGGAACCTACTAAGTTGATACCCTGGAGAAATAGTCATTGGCGTATGCAGACTTTTGCTGGCCATCCACAGTCTGTAAAAAATGGCTCTGCTTCAGGACCAACGTATTCAGGAAAGTTTGATGATAACAACTTATCGATTTCGCCAGCTATGCTTGCAAGCTCACAAAACCCCCATGCAGGCAGAGATATTCTACAGGATGCTGACATCACAAATAAAGTTCCACTTCACATGTCTCTGGAGGGAAATATACATGCTTCTGTCCGTAGTGACGACATTCTTGATCAGTCGCTTCACATTCCAATTTCTGAAGCACATACAACCGAGTGTCCCATCACCAACAATGCATCAAGCCAACTGGAGGAGATGGCTATTGAAGGGGGGACCATAAGCGTTTCAAGCCTTTATTCAGAAGGGTTATTGAACAGCTTGACTCAAGCTCTGCAGAATACTGGACTGGATTTGTCACAGGCTAGTATCTCCGTTCAGATTGATCTGGGCAAGAGAGCAAACAAGGGGATGCCATTTGCAACGCCTATATTTAAGGAAACTGGGAATCCTCACTCTGGCCACCCAGCAATGGCACATGTAGGGGACCTGGGCAGTGGTGATGACTCGGATCAAGCTAAAAAGCGACCAAGGACATGA | 990 | 45.25 | MRTGKSNQEDEEYEEDELVAKREGPAYTFNANTSIGNTKDVKNNDKANAIRSKHSVTEQRRRSKINERFQTLRDLIPHSDQKRDTASFLLEVIEYVHYLQEKVQKYEGSYQNWSGEPTKLIPWRNSHWRMQTFAGHPQSVKNGSASGPTYSGKFDDNNLSISPAMLASSQNPHAGRDILQDADITNKVPLHMSLEGNIHASVRSDDILDQSLHIPISEAHTTECPITNNASSQLEEMAIEGGTISVSSLYSEGLLNSLTQALQNTGLDLSQASISVQIDLGKRANKGMPFATPIFKETGNPHSGHPAMAHVGDLGSGDDSDQAKKRPRT | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 17116391 | 17123538 | - | Sed0015941.1 | Sed03g2273 | 707760 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g2273 | 329 | Gene3D | - | 47 | 119 | IPR036638 | GO:0046983(InterPro) | |
Sed03g2273 | 329 | MobiDBLite | consensus disorder prediction | 27 | 42 | - | - | |
Sed03g2273 | 329 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Sed03g2273 | 329 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 49 | 99 | IPR011598 | GO:0046983(InterPro) | |
Sed03g2273 | 329 | FunFam | BHLH domain class transcription factor | 47 | 119 | - | - | |
Sed03g2273 | 329 | SMART | finulus | 55 | 105 | IPR011598 | GO:0046983(InterPro) | |
Sed03g2273 | 329 | PANTHER | BES1-INTERACTING MYC-LIKE PROTEIN | 5 | 329 | IPR044295 | GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0046983(InterPro) | |
Sed03g2273 | 329 | MobiDBLite | consensus disorder prediction | 298 | 329 | - | - | |
Sed03g2273 | 329 | Pfam | Helix-loop-helix DNA-binding domain | 51 | 100 | IPR011598 | GO:0046983(InterPro) | |
Sed03g2273 | 329 | CDD | bHLH_AtBIM_like | 48 | 124 | - | - | |
Sed03g2273 | 329 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 47 | 119 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2273 | Sed-Chr3:17116391 | Sed06g0888 | Sed-Chr6:10721061 | 1.30E-45 | dispersed | |
Sed03g2273 | Sed-Chr3:17116391 | Sed12g2033 | Sed-Chr12:31166646 | 3.30E-52 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37926 | PF00010 | HLH | 1.60E-13 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g2273 | - | - | - | 0.0 |