Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2273 ATGAGAACGGGGAAAAGCAATCAAGAAGACGAAGAGTACGAGGAGGACGAGCTGGTTGCCAAAAGAGAGGGGCCGGCTTATACTTTTAACGCCAATACTAGCATCGGAAACACCAAAGATGTGAAGAACAATGATAAAGCTAATGCCATACGGTCGAAGCACTCTGTCACAGAACAACGCAGAAGAAGCAAGATTAATGAGAGATTCCAGACTTTGAGAGATCTTATACCTCACAGCGACCAAAAGAGAGATACCGCATCGTTTTTATTGGAGGTGATCGAGTATGTACATTATTTACAGGAAAAGGTGCAAAAGTACGAGGGTTCATATCAGAATTGGAGCGGGGAACCTACTAAGTTGATACCCTGGAGAAATAGTCATTGGCGTATGCAGACTTTTGCTGGCCATCCACAGTCTGTAAAAAATGGCTCTGCTTCAGGACCAACGTATTCAGGAAAGTTTGATGATAACAACTTATCGATTTCGCCAGCTATGCTTGCAAGCTCACAAAACCCCCATGCAGGCAGAGATATTCTACAGGATGCTGACATCACAAATAAAGTTCCACTTCACATGTCTCTGGAGGGAAATATACATGCTTCTGTCCGTAGTGACGACATTCTTGATCAGTCGCTTCACATTCCAATTTCTGAAGCACATACAACCGAGTGTCCCATCACCAACAATGCATCAAGCCAACTGGAGGAGATGGCTATTGAAGGGGGGACCATAAGCGTTTCAAGCCTTTATTCAGAAGGGTTATTGAACAGCTTGACTCAAGCTCTGCAGAATACTGGACTGGATTTGTCACAGGCTAGTATCTCCGTTCAGATTGATCTGGGCAAGAGAGCAAACAAGGGGATGCCATTTGCAACGCCTATATTTAAGGAAACTGGGAATCCTCACTCTGGCCACCCAGCAATGGCACATGTAGGGGACCTGGGCAGTGGTGATGACTCGGATCAAGCTAAAAAGCGACCAAGGACATGA 990 45.25 MRTGKSNQEDEEYEEDELVAKREGPAYTFNANTSIGNTKDVKNNDKANAIRSKHSVTEQRRRSKINERFQTLRDLIPHSDQKRDTASFLLEVIEYVHYLQEKVQKYEGSYQNWSGEPTKLIPWRNSHWRMQTFAGHPQSVKNGSASGPTYSGKFDDNNLSISPAMLASSQNPHAGRDILQDADITNKVPLHMSLEGNIHASVRSDDILDQSLHIPISEAHTTECPITNNASSQLEEMAIEGGTISVSSLYSEGLLNSLTQALQNTGLDLSQASISVQIDLGKRANKGMPFATPIFKETGNPHSGHPAMAHVGDLGSGDDSDQAKKRPRT 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17116391 17123538 - Sed0015941.1 Sed03g2273 707760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2273 329 Gene3D - 47 119 IPR036638 GO:0046983(InterPro)
Sed03g2273 329 MobiDBLite consensus disorder prediction 27 42 - -
Sed03g2273 329 MobiDBLite consensus disorder prediction 1 42 - -
Sed03g2273 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983(InterPro)
Sed03g2273 329 FunFam BHLH domain class transcription factor 47 119 - -
Sed03g2273 329 SMART finulus 55 105 IPR011598 GO:0046983(InterPro)
Sed03g2273 329 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 329 IPR044295 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0046983(InterPro)
Sed03g2273 329 MobiDBLite consensus disorder prediction 298 329 - -
Sed03g2273 329 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983(InterPro)
Sed03g2273 329 CDD bHLH_AtBIM_like 48 124 - -
Sed03g2273 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 119 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2273 Sed-Chr3:17116391 Sed06g0888 Sed-Chr6:10721061 1.30E-45 dispersed
Sed03g2273 Sed-Chr3:17116391 Sed12g2033 Sed-Chr12:31166646 3.30E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37926 PF00010 HLH 1.60E-13 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2273 - - - 0.0