Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2277 ATGGTTTCCATTCTCTTTCTTTTTCTTCTTCTTCTTCTTCCTCTCTCTCTCTCTGCAAATTCATCCTCCATTGCCACTCTGCAAAACCATCCTCTTAAGCATTATGTTGTTTACATGGGAAGTGGAGGAAGCAGCTATGGAGAAGCTGCTCAATTGGATTACCTTCAACTGTTGTCCTCTGTAATTCCAAGGAAAGAGAGGGATGTGGTCCACCAATACCACCATGCTTTCAAAGGCTTTTCAGCCTTGTTAACTGAGGAAGAAGCCTCTTCTCTTTCAGGTATTGATGGAATCGTGTCGGTGTTCCCCGATCCCACGCTTCAGCTCCACACTACACGTTCTTGGGATTTCTTGGACTCCATCGCCGGCCTCCGCCCTCCGACGACGACGCCGTCGCCGCCGCCTCATTCGACGGATGTCATCGTCGGCGTCATCGACACCGGGATTTGGCCGGAGTCTGAATCTTTCCACGACGAGGGGCTCGGAGAAATTCCTTCTAGATGGAAAGGAGTTTGTATGGAGGCGCCTGATTTCAAGAGCTCCAATTGCAACAGGAAGTTGATTGGTGCAAGATACTACAACTCCATAGAGTTCAATGGGAAAGATGATCGTGCTGGCGCGCCGAAGGGCTCACCGAGGGACTCCCTCGGCCATGGGACGCACACTTCGTCGATTGCTGCAGGAGCGAGAGTTCCCAATGCAAGTTACTTTGGCTTGGCAAGAGGGACGGCAAGGGGCGGTGGAGCTGCTTCTACACGGATTGCGACCTATAAGGTTTGCGCCGGCGTTGGCTGCTCTGGCGCTGCCATTCTTAAAGCCATGGATGATGCAGTCAAGGATGGAGTTGATATTATTTCGATCTCGATCGGGATTGGTTCCCCTTTGTTTCAATCTGATTATTTGAATGACCCAATTGCCATTGGAGCATTGCATTCCCAACTAATGGGAGTTTTGGTTGTCTGCTCTGGTGGAAATGATGGCCCTGATCCTAACACTGTGGGGAATATTGCTCCTTGGATTTTCACTGTTGGTGCTTCTAATATTGACAGAGATTTCCAGTCCACGGTGGTTCTTGGAAATGGCAACACTTTTCAGGGGACTGCTATAAATCTCTCTAATCTTACTAGCTCGAAGACTTATCCTCTTGTTTTTGGAAAGGACGCTGCTGCTAAATTTGCGCCCGTCTCAGAAGCAAGAAATTGTTATCCCGGATCGCTAGATCATGCCAAAGTTGCAGGTAAGATCGTTGTTTGCGTCTCCGATGACTTCAGTACTACAAGGACAATAAAGGAACTGGTTGTACAAGATGCTAAAGCCTTGGGGTTAATACTGATCAGCGATGCATCAAAAACTGTGCCATTGGATTCAAACATTTTCCCATTTACACAAATTGGGAATTCAGAAGGTCTCCAGATTCTTGAGTACATTAACTCCACCAAGAACCCAACAGCCACAATTCTCAGAACAGTGGAAGTTCCAAGACTTAAACCTGCTCCAACAGTGGCTTATTTCTCATCGAGAGGGCCATCGCCGCTTACTGAAAACATTCTCAAGCCTGATATCACGGCTCCAGGAATATCTATTTTAGCAGCTATGGTTCCGAAAAGTGATGCAGATAGCGGTCCAATTGGTAAGAAGCCCTCCAATTTTGCATTGAAATCCGGGACGTCAATGGCCTGTCCACACGTAGCAGGTGCTGCTGCATTCGTTAAATCAGCCCGTTACAATTGGAGTTCTTCCATGATCAAGTCCGCACTCATGACAACAGCAACTATATATGATAATCAAAGAAAGTTCATGAGAAACAGCACAAGCAACCCTTCAAATCCACATGAGATGGGAGCTGGAGAAATCAGCCCCATAAAAGCTGTTAATCCTGGATTAGTGTTCGAATCTACAAACGAAGATCTTCTGCGTTTCCTCTGCTATTACGGCTATTCTAACAAGATCATAAGATCTGTGTCGAAACAAAACTTCAGTTGTCCGAAAAATTCCAAGGAAGATCTTATCTCCAGTCTCAACTATCCATCCATCTCAATTGGCAAACTTGATAGAAAGCAAGCTGCCAAAGTAATAGAAAGAACAGTGACAAATGTAGGAGCCCCAAACACCACTTACATTGCCAAGGTTCATTCTTCAGAGGGTTTACTAGTGAAAGTAATACCAAATAAGATTGTTTTCTCGGAGAATGTAAAGAAAGTGACTTTCAAAGTCTCATTTTATGGCAAGGATGCTCGCAGTGGCTACAACTTCGGGTCGATAACATGGCGGGATGGTGTAAATTCGGTTCGTACTGTTTTTGCTGTTAATGTAGAATAA 2319 45.71 MVSILFLFLLLLLPLSLSANSSSIATLQNHPLKHYVVYMGSGGSSYGEAAQLDYLQLLSSVIPRKERDVVHQYHHAFKGFSALLTEEEASSLSGIDGIVSVFPDPTLQLHTTRSWDFLDSIAGLRPPTTTPSPPPHSTDVIVGVIDTGIWPESESFHDEGLGEIPSRWKGVCMEAPDFKSSNCNRKLIGARYYNSIEFNGKDDRAGAPKGSPRDSLGHGTHTSSIAAGARVPNASYFGLARGTARGGGAASTRIATYKVCAGVGCSGAAILKAMDDAVKDGVDIISISIGIGSPLFQSDYLNDPIAIGALHSQLMGVLVVCSGGNDGPDPNTVGNIAPWIFTVGASNIDRDFQSTVVLGNGNTFQGTAINLSNLTSSKTYPLVFGKDAAAKFAPVSEARNCYPGSLDHAKVAGKIVVCVSDDFSTTRTIKELVVQDAKALGLILISDASKTVPLDSNIFPFTQIGNSEGLQILEYINSTKNPTATILRTVEVPRLKPAPTVAYFSSRGPSPLTENILKPDITAPGISILAAMVPKSDADSGPIGKKPSNFALKSGTSMACPHVAGAAAFVKSARYNWSSSMIKSALMTTATIYDNQRKFMRNSTSNPSNPHEMGAGEISPIKAVNPGLVFESTNEDLLRFLCYYGYSNKIIRSVSKQNFSCPKNSKEDLISSLNYPSISIGKLDRKQAAKVIERTVTNVGAPNTTYIAKVHSSEGLLVKVIPNKIVFSENVKKVTFKVSFYGKDARSGYNFGSITWRDGVNSVRTVFAVNVE 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17157814 17165718 + Sed0021717.1 Sed03g2277 707764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2277 772 FunFam Subtilisin-like protease SBT1.5 139 361 - -
Sed03g2277 772 SUPERFAMILY Subtilisin-like 109 628 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed03g2277 772 Gene3D - 349 493 - -
Sed03g2277 772 Pfam PA domain 379 471 IPR003137 -
Sed03g2277 772 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 35 762 IPR045051 -
Sed03g2277 772 Gene3D Peptidase S8/S53 domain 139 636 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed03g2277 772 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 17 110 IPR037045 -
Sed03g2277 772 FunFam subtilisin-like protease SBT1.5 349 492 - -
Sed03g2277 772 Pfam Peptidase inhibitor I9 35 110 IPR010259 -
Sed03g2277 772 ProSiteProfiles Serine proteases, subtilase domain profile. 114 624 - -
Sed03g2277 772 PRINTS Subtilisin serine protease family (S8) signature 554 570 IPR015500 -
Sed03g2277 772 PRINTS Subtilisin serine protease family (S8) signature 137 156 IPR015500 -
Sed03g2277 772 PRINTS Subtilisin serine protease family (S8) signature 214 227 IPR015500 -
Sed03g2277 772 CDD PA_subtilisin_like 355 486 - -
Sed03g2277 772 Gene3D - 641 771 - -
Sed03g2277 772 ProSitePatterns Serine proteases, subtilase family, serine active site. 555 565 IPR023828 -
Sed03g2277 772 Pfam Fibronectin type-III domain 673 769 IPR041469 -
Sed03g2277 772 MobiDBLite consensus disorder prediction 203 224 - -
Sed03g2277 772 CDD Peptidases_S8_3 107 591 IPR034197 -
Sed03g2277 772 Pfam Subtilase family 138 602 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2477 Sed-Chr1:18525072 Sed03g2277 Sed-Chr3:17157814 1.40E-181 dispersed
Sed03g2277 Sed-Chr3:17157814 Sed08g2884 Sed-Chr8:39952090 3.60E-142 dispersed
Sed03g2277 Sed-Chr3:17157814 Sed03g1334 Sed-Chr3:8497376 1.10E-143 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2277 K25898 - csv:101220772 1254.97