Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2279 ATGTCCTCCGCCGCCCCTCCTTCCTCCCCTGCCTCCCCCACTGCCGGCATCGGGTTGGGCTACGGCATTGCCATCACCGTGAGCATCCTCGTGTTCATCTCCACCATGATGCTGGTCTCCTATGCTTGCATTCGCGTGAAATCCACTCGTCCTAGACCTTCTTCCTCTCAATTGTCTGTCCCTCCTCCCTCTGTAGACAATGTGGTGGTTCTCATGGTCGGATTGGATGGATCCCTCATCGAATCGTACCCTAAGTTGGTGCTGGGTGAGAGCCGCCGTCTTCCTCCCCCTAACCAGGGCAGCACTTGCTGCTCAATTTGCCTATCCGATTACAGGCCGAACGACTCTGTCCGCTGCATTCCGGATTGTGGCCACTGTTTCCACTCCGATTGCATTGATGAATGGCTGCGTATGAGTGCCACTTGCCCGCTCTGTCGATACTCCCCTGCGCCTTCCCCTCTTGCTACTCCTCTCTCTGACTTCGTGCCTCTGGCTTCCAATGCCAGGTGA 510 56.86 MSSAAPPSSPASPTAGIGLGYGIAITVSILVFISTMMLVSYACIRVKSTRPRPSSSQLSVPPPSVDNVVVLMVGLDGSLIESYPKLVLGESRRLPPPNQGSTCCSICLSDYRPNDSVRCIPDCGHCFHSDCIDEWLRMSATCPLCRYSPAPSPLATPLSDFVPLASNAR 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17176636 17177145 + Sed0025736.1 Sed03g2279 707766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2279 169 PANTHER RING-H2 FINGER PROTEIN ATL67 1 168 IPR044289 GO:0016567(InterPro)|GO:0016740(InterPro)
Sed03g2279 169 CDD RING-H2_EL5-like 103 146 - -
Sed03g2279 169 SUPERFAMILY RING/U-box 97 150 - -
Sed03g2279 169 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Sed03g2279 169 Pfam Ring finger domain 103 146 IPR001841 -
Sed03g2279 169 SMART ring_2 104 145 IPR001841 -
Sed03g2279 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 151 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2279 Sed-Chr3:17176636 Sed13g0782 Sed-Chr13:5763479 1.00E-25 dispersed
Sed03g2279 Sed-Chr3:17176636 Sed14g0265 Sed-Chr14:2795821 1.30E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2279 - - - 0.0