Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g2279 | ATGTCCTCCGCCGCCCCTCCTTCCTCCCCTGCCTCCCCCACTGCCGGCATCGGGTTGGGCTACGGCATTGCCATCACCGTGAGCATCCTCGTGTTCATCTCCACCATGATGCTGGTCTCCTATGCTTGCATTCGCGTGAAATCCACTCGTCCTAGACCTTCTTCCTCTCAATTGTCTGTCCCTCCTCCCTCTGTAGACAATGTGGTGGTTCTCATGGTCGGATTGGATGGATCCCTCATCGAATCGTACCCTAAGTTGGTGCTGGGTGAGAGCCGCCGTCTTCCTCCCCCTAACCAGGGCAGCACTTGCTGCTCAATTTGCCTATCCGATTACAGGCCGAACGACTCTGTCCGCTGCATTCCGGATTGTGGCCACTGTTTCCACTCCGATTGCATTGATGAATGGCTGCGTATGAGTGCCACTTGCCCGCTCTGTCGATACTCCCCTGCGCCTTCCCCTCTTGCTACTCCTCTCTCTGACTTCGTGCCTCTGGCTTCCAATGCCAGGTGA | 510 | 56.86 | MSSAAPPSSPASPTAGIGLGYGIAITVSILVFISTMMLVSYACIRVKSTRPRPSSSQLSVPPPSVDNVVVLMVGLDGSLIESYPKLVLGESRRLPPPNQGSTCCSICLSDYRPNDSVRCIPDCGHCFHSDCIDEWLRMSATCPLCRYSPAPSPLATPLSDFVPLASNAR | 169 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 17176636 | 17177145 | + | Sed0025736.1 | Sed03g2279 | 707766 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g2279 | 169 | PANTHER | RING-H2 FINGER PROTEIN ATL67 | 1 | 168 | IPR044289 | GO:0016567(InterPro)|GO:0016740(InterPro) | |
Sed03g2279 | 169 | CDD | RING-H2_EL5-like | 103 | 146 | - | - | |
Sed03g2279 | 169 | SUPERFAMILY | RING/U-box | 97 | 150 | - | - | |
Sed03g2279 | 169 | ProSiteProfiles | Zinc finger RING-type profile. | 104 | 146 | IPR001841 | - | |
Sed03g2279 | 169 | Pfam | Ring finger domain | 103 | 146 | IPR001841 | - | |
Sed03g2279 | 169 | SMART | ring_2 | 104 | 145 | IPR001841 | - | |
Sed03g2279 | 169 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 151 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2279 | Sed-Chr3:17176636 | Sed13g0782 | Sed-Chr13:5763479 | 1.00E-25 | dispersed | |
Sed03g2279 | Sed-Chr3:17176636 | Sed14g0265 | Sed-Chr14:2795821 | 1.30E-28 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g2279 | - | - | - | 0.0 |