Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2289 ATGGGAGACGGCAATAACACCAACAGAGGCCTTGTCTCGGGCAACGCCGCCGCCAATTCCAGCCGGAGCAACAACGGCAGCCACAACAAGAAGCCGGAGTGGCTGCAGCACTACGATCTGATTGGGAAGATCGGAGAGGGAACCTATGGCCTTGTGTTCCTTGCGAAGATCAAACCACCTTCGCCGAGTCGCGGCAAGTCTATTGCGATCAAAAAGTTCAAGCAATCCAAGGACGGTGATGGCGTCTCCCCAACTGCCATCCGCGAGATTATGTTACTGCGGGAAATAACACATGAGAATGTCGTCAAGCTTGTAAATGTTCATATCAATCATGCAGATATGTCATTGTATCTAGCTTTTGATTATGCTGAACACGACCTTTACGAAATCATTAGACATCATAGGGACAAGGCTAATCAACCCCTTACTCAGTACACTGTTAAATCCTTGCTCTGGCAACTTCTCAATGGATTGAACTATCTCCACAGTAATTGGATCATTCATCGTGATTTAAAGCCATCGAATATTTTGGTAATGGGTGAAGGGGAAGAACAAGGATTGGTCAAAATAGCTGATTTTGGACTTGCAAGAATATACCAAGCTCCTTTGAAGCCATTATCTGAAAATGGAGTTGTCGTCACCATTTGGTATCGTGCACCTGAACTTCTCCTTGGATCTAAGCACTATACTAGCGCTGTTGATATGTGGGCTGTTGGATGTATTTTTGCTGAACTTTTGACGTTGAAGCCATTATTTCAAGGGCAAGAAGTCAAAGGGACTCCAAATCCTTTCCAGCTTGATCAACTCGACAAGATTTTTAAGGTTTTAGGCCATCCCACACTAGAGAAGTGGCCAACACTTGCTTATCTTCCACATTGGCAACAAGATTTACAGCACATACAGGGGCATAAATACGACAATGCTGGATTGCATAATGTTGTCCACCTTTCTCCAAAAAGTCCGCCATATGATCTTCTGTCCAAAATGCTCGACTATGATCCTCGAAAGCGCATAACAGCAGCCCAAGCTCTTGAGCACGAGTATTTTCGTTTAGAGCCTCTCCCGGGATCCAATGCTCTGGTACCAATCCAACCTGGAGAGAAGGTCATTAATTATCCAACTCGCCCTGTGGACACAACCACAGATTTTGAGGGAACAACTAACATTCAACCCTCCCATATGGTAACATCTGGGAATGCTGTAAACATACAAGGTGCTCATGGGGTGGCAGGAAGATCTGCCCCTCGGCCAATGATTGGAGTTAGCATGCCAAGGATGCCACCTCAGGCCATGGCTCCTTATAACCTTGCATCCCAGGCTGGGATGGGTATGAATCCTGGTGGCATACCAATGCAGCGTGGTGTTTCTGCCCAAGCACATCAGCAGCAGTTAAGGAGAAAAGATCCAGGAATGGGAATGCCAGGTTATCCTCCACAACAGAAACAACAAAGACGCTACTGA 1461 46.2 MGDGNNTNRGLVSGNAAANSSRSNNGSHNKKPEWLQHYDLIGKIGEGTYGLVFLAKIKPPSPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKANQPLTQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGLVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGSKHYTSAVDMWAVGCIFAELLTLKPLFQGQEVKGTPNPFQLDQLDKIFKVLGHPTLEKWPTLAYLPHWQQDLQHIQGHKYDNAGLHNVVHLSPKSPPYDLLSKMLDYDPRKRITAAQALEHEYFRLEPLPGSNALVPIQPGEKVINYPTRPVDTTTDFEGTTNIQPSHMVTSGNAVNIQGAHGVAGRSAPRPMIGVSMPRMPPQAMAPYNLASQAGMGMNPGGIPMQRGVSAQAHQQQLRRKDPGMGMPGYPPQQKQQRRY 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17393806 17424473 - Sed0023536.1 Sed03g2289 707776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2289 486 PANTHER CELL DIVISION PROTEIN KINASE 38 349 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0016592(PANTHER)
Sed03g2289 486 SMART serkin_6 38 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2289 486 CDD STKc_CDK8_like 38 349 - -
Sed03g2289 486 MobiDBLite consensus disorder prediction 1 31 - -
Sed03g2289 486 Gene3D Transferase(Phosphotransferase) domain 1 121 361 - -
Sed03g2289 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2289 486 ProSitePatterns Protein kinases ATP-binding region signature. 44 72 IPR017441 GO:0005524(InterPro)
Sed03g2289 486 FunFam Putative cyclin-dependent kinase E-1 123 362 - -
Sed03g2289 486 FunFam Cyclin-dependent kinase e-1 26 122 - -
Sed03g2289 486 SUPERFAMILY Protein kinase-like (PK-like) 33 350 IPR011009 -
Sed03g2289 486 ProSiteProfiles Protein kinase domain profile. 38 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2289 486 Pfam Protein kinase domain 38 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2289 486 Gene3D Phosphorylase Kinase; domain 1 22 120 - -
Sed03g2289 486 MobiDBLite consensus disorder prediction 444 486 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2289 Sed-Chr3:17393806 Sed04g0029 Sed-Chr4:163933 3.70E-68 dispersed
Sed14g0202 Sed-Chr14:2270621 Sed03g2289 Sed-Chr3:17393806 3.20E-261 wgd
Sed14g0538 Sed-Chr14:5418258 Sed03g2289 Sed-Chr3:17393806 1.30E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78916 PF00069 Pkinase 4.60E-67 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2289 K02208 - csv:101203984 884.404