Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2290 ATGACCCTACAACATTTGGATGCCGAGGAGACCCGAATGAACCACAAAGCACCAAATTCAGTGAAAAATCCTCCGGATTCTCTAAGAAGAGTGGATCAAATCGCCAAAAATGGCGTAAATAATTCCGACACCGGGGTATGCAACAATTCAGCGAAGAGCGGCAGCGACAGCGGCGGAGGAGGAAATGGTTACCGGTGCGAGAACAACGAGACGTCAGGAGTGATGATAAAACCGCACACGGGCGGGGATGTGCGGTGGGACGCAGTGAACATGGTGTCGAAAGGAAGCCAGTTGAATCTGAGCCATTTCAGGCTGTTGAAGCGGCTAGGGTACGGCGACATTGGGAGTGTGTATCTGGTGGAATTGAGAGGAAGCGATGCGTTTTTCGCCATGAAAGTTATGGACAAAGCTTCTTTGGCGAGTCGGAACAAGCTTCTCCGGTCCCAAACCGAGCGGGAGATCTTAGGGCTTTTGGATCATCCGTTTTTGCCAACTCTATATTCCTATTTTGAAACAGATAAGTTCTATTGCTTGGTTATGGAGTTTTGCAGCGGTGGGAATTTGCATTCTCTTCGCCAAAAGCAACCTCACAAGTATTTTACAGAAGAAGCTGCCAGGTTCTATGCATCAGAAGTTCTATTAGCATTGGAATATCTCCACATGTTAGGAATAGTGTACAGAGATTTAAAACCAGAAAATCTGTTAATCCGAGACGAAGGCCACATAATGCTCTCCGATTTCGACCTCTCTCTCCGCTGCTCCGTCAGCCCCACCCTCGTCAAATCCTCCTCCGTCAACGTCAACGGCACCTCCACCAACGGCATCTCCAGCGCCAACGGCAGCGGAACCGGGGCCATCCTCGACGACGAGTTCGTCGTCCACGGTTGCATGCAGCCCTCCAACTTCTTCCCCCGCATCCTCCCCTCCAAGAAGAATCGCAAGTCCAAATCCGACTTCGGCCTCTTCGTCGGCGGGGCTCTGCCAGAACTCATGGCGGAGCCGACGAACGTCAGATCCATGTCGTTCGTCGGCACGCACGAGTATCTAGCCCCGGAGATCATCCAGGGCGAAGGCCACGGCAGCGCCGTCGACTGGTGGACGTTCGGGATCTTCCTCTACGAGCTTCTGCACGGAACGACGCCGTTCAAAGGATCTGGAAATCGAGCCACATTGTTCAACGTCGTCGGGCAACCGCTCAGGTTCCCGGAGACGCCGCAGGTTAGTCTGGCGGCGAGGGATTTGATTCGAGGACTTCTGGTGAAGGAGCCGCAAAAGAGAATTGCGTATCGGAGAGGCGCTACTGAGATTAAACAGCATCCATTCTTTGATGGTGTGAATTGGGCGTTGGTTAGGAGCGCCATGCCGCCGCACGTGCCGGAGCCGGTCGACTTCTCGCAGTTTGCTAATAAGAAGAACGGCGGCAATGGCGGAATCGGCGGTTGTGGTGGTGGCGGAGTTGTGGAAGAGAAGAAGGCGGTGGAAGTTACGGCGGCGATTGGGCAGAATTCTTCGCCGCCTACTGGTGAAGATTCTACTTATGTGGATTTTGAGTACTTCTAA 1560 53.01 MTLQHLDAEETRMNHKAPNSVKNPPDSLRRVDQIAKNGVNNSDTGVCNNSAKSGSDSGGGGNGYRCENNETSGVMIKPHTGGDVRWDAVNMVSKGSQLNLSHFRLLKRLGYGDIGSVYLVELRGSDAFFAMKVMDKASLASRNKLLRSQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPHKYFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSVNVNGTSTNGISSANGSGTGAILDDEFVVHGCMQPSNFFPRILPSKKNRKSKSDFGLFVGGALPELMAEPTNVRSMSFVGTHEYLAPEIIQGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVGQPLRFPETPQVSLAARDLIRGLLVKEPQKRIAYRRGATEIKQHPFFDGVNWALVRSAMPPHVPEPVDFSQFANKKNGGNGGIGGCGGGGVVEEKKAVEVTAAIGQNSSPPTGEDSTYVDFEYF 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17431222 17434158 - Sed0018045.1 Sed03g2290 707777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2290 519 FunFam Serine/threonine-protein kinase AGC1-5 101 186 - -
Sed03g2290 519 Gene3D Transferase(Phosphotransferase) domain 1 187 256 - -
Sed03g2290 519 FunFam serine/threonine-protein kinase D6PK-like 187 254 - -
Sed03g2290 519 Pfam Protein kinase domain 104 257 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2290 519 Pfam Protein kinase domain 317 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2290 519 MobiDBLite consensus disorder prediction 1 64 - -
Sed03g2290 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2290 519 PANTHER FLIPPASE KINASE 1-RELATED 45 464 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed03g2290 519 ProSiteProfiles Protein kinase domain profile. 103 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2290 519 SMART serkin_6 103 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2290 519 CDD STKc_phototropin_like 101 463 - -
Sed03g2290 519 FunFam Serine/threonine-protein kinase AGC1-7 335 460 - -
Sed03g2290 519 Gene3D Phosphorylase Kinase; domain 1 101 186 - -
Sed03g2290 519 Gene3D Transferase(Phosphotransferase) domain 1 317 460 - -
Sed03g2290 519 SUPERFAMILY Protein kinase-like (PK-like) 100 465 IPR011009 -
Sed03g2290 519 MobiDBLite consensus disorder prediction 34 64 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2290 Sed-Chr3:17431222 Sed12g0019 Sed-Chr12:123872 2.20E-148 dispersed
Sed14g0203 Sed-Chr14:2300808 Sed03g2290 Sed-Chr3:17431222 6.70E-222 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78917 PF00069 Pkinase 1.40E-21 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2290 - - - 0.0