Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2296 ATGTTGGGGATCTTGAACTTAATTGTTTCCATATCCATTTTAGTTGCTTCTGTAGAAGATGCCAACTTCATCTTCAATAACGGTTTCGGCCCCGGAAATATGAGCCTGGACGGCGTAGCGAAATTGACTTCCAATGGCTTGTTGATGCTCACAAATTACGACAGCCCAAACCAAATCGGGCATGCCTATTACCCCAAAGCCATTTCCTTCAAAAACAGATCAAACAACTCCTCTGTTGTTTCCTCCTTCTCTGCAACTTTTGTCTTCGCCATACAACACATATATAATGATCTCTCCGGCCAAGGATTGGCGTTCGTCATTTCGCCATCGAAGGGTATACCCGAAGCTCTGGCAGGCGAGTATCTCGGGCTGTTCAACAAGTCTAGCGATGGGAACCAAACGGATCACATCTTTGCGGTTGAACTCGACACAATATATAATCAGTACTTGAACGACATCAACAACAACCATGTTGGAATCGACATCAATGGACTGGAGTCTAAGCTAGCGAAGCCGGCGGGGTATTGGGTCGACGGTGAATTGAGGAATTTGACGCTCATAAGTGGGGAGCGGATGCAAGTTTGGGTGGAATATGATGCCTTTGAAAAGCTAATTAATGTGACTATGGCTCCGATTGATGTGGTCGATAAACCAACGGTTCCGCTTTTGTCTTTGCGGTGGGATTTGTCGTCGGTTATCAACGACTTCATGTACGTTGGATTCTCGTCTGGGACGGGCACTATTACGACGTGCCATTACATTCTGGGATGGAGCTTTAGAATCAATGGGCAAGCGCAGAGGCTTGTTGTGTCTCAACTTCCTGATCTGCCACCTCCAATACCACCTAAATCTAAATTCTGGAATGTGAAGTTTCCTTTGATTTGTGCTTCAGTAGCTATAGTCGCAGTTTCTTGTGTAATTTATTTACTTTACCGGAGGCGAAAGTTTGCAGAGATTTTGGAGGAATGGGAGCAAGAATACGGACCCATAAGGTTCAATTATAAGGATCTATACAAAGCAACAAAGGGATTTAGAGAGAAAGAACTTTTGGGAGTTGGGGGATTCGGTCGAGTTTACAAAGGAGTGTTACCAAATTCGAAAGTTGAAGTTGCAGTGAAGAAAATATCTCACGAATCGAAACAAGGGATGAAGGAATTCGTGGCGGAGATAGTGAGTGTCGGGCATCTTCGACACCGGAATGTGGTAGGTTTGCTCGGGTACTGCCGGCGAAAAGGGGAGTTGTTTTTGGTGTACGAATATATGCCAAATGGAAGCTTGGATAAGTATTTACACGACAGCCCAGAAACCACTGTGAATTGGGAACAAAGATTTGAGATCATAAAAGGGGTTGCGTCTGGACTGTTTTATCTTCATGAACAGTGCGAACAAGTCGTGATTCATAGAGACGTGAAAGCCAGTAATGTGTTGCTTGATGCAGAGTTCAATGCAAGATTAGGAGATTTTGGTTTGGCCAAATTATATGACCGTGGAGCCGATCCTCGAACCACCAACGTCGTTGGAACTCTCGGGTATCTAGCACCAGAGCTGATGAGAACTGGGAGAGCCACAATTAGATCGGATGTATATGCATTTGGAGCGTTTCTTCTAGAAGTTGCATGCGGAAGTAGGCCAGTTCAACAGCGAAACGAAGCCGATGATTTTGTATTAATGGATTGGGTGTTCTCTTGTTGGACCAGCGGGAATATTCTTAGAACCGCCGACCCTAAATTGCATGGCAATTTCGAACCTTCGGAGCTCGAATTGGTGCTCAAACTTGGGATGCTCTGTTCTCATTCCTCGCCCGCGGTGCGCCCCTCTATGCACCAAGTTCTGCAGTATTTGGAGGCTGATGCACCCCTGCCCGATCTCGCCTTGCTTCGTTGGCGACTCTCTGGCAGTGGCTTCTTGAACTTGATGCGTCGACATCGCGACGGCAATGATGTCGGCTACGGGTTGGATGATATATCCATGTCTTACCCCGTTTTGCCGGAATCCAATGTCTCAAGCTCACCATCCATGGTGGAGTCTATTATGAAGGAAGGTCGTTAG 2049 46.12 MLGILNLIVSISILVASVEDANFIFNNGFGPGNMSLDGVAKLTSNGLLMLTNYDSPNQIGHAYYPKAISFKNRSNNSSVVSSFSATFVFAIQHIYNDLSGQGLAFVISPSKGIPEALAGEYLGLFNKSSDGNQTDHIFAVELDTIYNQYLNDINNNHVGIDINGLESKLAKPAGYWVDGELRNLTLISGERMQVWVEYDAFEKLINVTMAPIDVVDKPTVPLLSLRWDLSSVINDFMYVGFSSGTGTITTCHYILGWSFRINGQAQRLVVSQLPDLPPPIPPKSKFWNVKFPLICASVAIVAVSCVIYLLYRRRKFAEILEEWEQEYGPIRFNYKDLYKATKGFREKELLGVGGFGRVYKGVLPNSKVEVAVKKISHESKQGMKEFVAEIVSVGHLRHRNVVGLLGYCRRKGELFLVYEYMPNGSLDKYLHDSPETTVNWEQRFEIIKGVASGLFYLHEQCEQVVIHRDVKASNVLLDAEFNARLGDFGLAKLYDRGADPRTTNVVGTLGYLAPELMRTGRATIRSDVYAFGAFLLEVACGSRPVQQRNEADDFVLMDWVFSCWTSGNILRTADPKLHGNFEPSELELVLKLGMLCSHSSPAVRPSMHQVLQYLEADAPLPDLALLRWRLSGSGFLNLMRRHRDGNDVGYGLDDISMSYPVLPESNVSSSPSMVESIMKEGR 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17633493 17635620 - Sed0005175.1 Sed03g2296 707783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2296 682 ProSitePatterns Protein kinases ATP-binding region signature. 350 374 IPR017441 GO:0005524(InterPro)
Sed03g2296 682 CDD STKc_IRAK 350 615 - -
Sed03g2296 682 Gene3D Phosphorylase Kinase; domain 1 330 420 - -
Sed03g2296 682 SUPERFAMILY Protein kinase-like (PK-like) 320 615 IPR011009 -
Sed03g2296 682 FunFam Lectin-domain containing receptor kinase A4.3 329 420 - -
Sed03g2296 682 FunFam L-type lectin-domain containing receptor kinase V.9 20 266 - -
Sed03g2296 682 PANTHER - 22 627 IPR050528 GO:0002229(PANTHER)|GO:0004675(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
Sed03g2296 682 Gene3D - 19 273 - -
Sed03g2296 682 SMART serkin_6 344 614 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2296 682 Pfam Legume lectin domain 22 273 IPR001220 GO:0030246(InterPro)
Sed03g2296 682 FunFam L-type lectin-domain containing receptor kinase S.4 421 626 - -
Sed03g2296 682 Pfam Protein kinase domain 345 612 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2296 682 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 280 IPR013320 -
Sed03g2296 682 Gene3D Transferase(Phosphotransferase) domain 1 421 624 - -
Sed03g2296 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2296 682 CDD lectin_legume_LecRK_Arcelin_ConA 22 263 IPR001220 GO:0030246(InterPro)
Sed03g2296 682 ProSiteProfiles Protein kinase domain profile. 344 620 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2296 Sed-Chr3:17633493 Sed04g1244 Sed-Chr4:26202791 4.20E-219 dispersed
Sed03g2296 Sed-Chr3:17633493 Sed03g2297 Sed-Chr3:17653213 2.10E-303 tandem
Sed11g1777 Sed-Chr11:32737096 Sed03g2296 Sed-Chr3:17633493 1.60E-151 transposed
Sed14g0524 Sed-Chr14:5196773 Sed03g2296 Sed-Chr3:17633493 3.70E-268 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78918 PF00069 Pkinase 5.90E-50 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2296 - - - 0.0