Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2297 ATGGCATCAATTTTGATCTTCACTTTAATTGTTTCCATATCCATTTGTGTTGCTTCTGACGATGCCAATTTCACCTTCAATGGCTTCCGCTCCGGCGATCTCTTTCTCGACGGCGTCGCCAACACTTCCAATGGCCTTTTGATTCTTACAAATTACGACACCGACCAAGAAATCGGCCACGCCTTTTACCCCAATTCCATTTCCTTCAAGAACAAGAAGTCAAACAATTCCTCTGTTTCCTCCTTCTCGGCTACTTTCGTCTTCGCCATAAGTTCAAATCTCAATGCCCCCGGCCATGGAATTGCCTTTGTCATTTCTCCAACCCGAGGTATCCCCGGAGCTCGGTCAAGCCAAAGCCTCGGCCTGTTCAACGAGTCCAACAACGGGAAGGAAACGAATCACATCTTTGCGGTTGAACTCGACACCATTGAGAATAAAGAACTTGGAGACATCAACAAAAACCATGTTGGAATTGACATTAACGGGCTGGTTTCGAAGAAGCAATTTCGGGCAGGGTACTACGTGGAAGGAGAATTTAGGAACTTGACGCTAACCAGTGGGGAAGCCATGCAAGTTTGGGTGGAATACGACGGTTTTGAAAAGCTAATTACTGTCACTATGGCTCCAATTGATATCATCGATAAACCCGAAACTCCGCTCTTGTCTTTGATGCAGGATTTGTCGTCGGTCTTCAACGACATTATGTACGTCGGATTCTCGTCTTCAACAGGCTCCTCTAAGACGTGGCATTACATTCTGGGTTGGAGCTTTACAATCAATGGTCAAGCGCAGAGGCTTGATCTGTCTCAACTTCCTAAGCTTCCACCTGCAAAAACACCAACATCTAAACTCCTGACGATTGGGTTACCCTCGATTTGTGCTTCAGTAGCTTTCATGGCAGCTTTCGGGGTGATTTATTTCTTGTATCGAAGGCGAAAGTTCGCGGAGATTTTGGAAGACTGGGAGGAGGAATATGGACCCATAAGGTTCAAATACAAGAATCTATTCAAAGCCACAAAGGGGTTTAGAGAGAAACATATTCTGGGAGTTGGGGGATTCGGCAGAGTGTACAAAGGTGTATTACCAAATTCAAAAATTGAAGTTGCAGTGAAGAAAATATCTCATGAATCGAAACAGGGGATGAAGGAATTTGTGGCGGAGATAGTGAGCGTCGGGCATCTCCGACACCGGAACGTGGTGGGTTTGTTGGGATACTGTCGCCGGAAAGGGGAGCTGTTTTTAGTGTACGAATATATGAAAAATGGAAGCTTGGATAAGTATTTATACGACAGGCCAGAAACCACCGTGAACTGGGAACAGAGATTTGAGATCATAAAAGGGGTTGCATCCGGGCTGTTTTATCTTCATGAACAATGTGAACAAGTCGTGATTCATAGAGATGTGAAAGCGAGTAATGTGTTACTTGATGAAGAGTTCAATGCGAGATTGGGAGATTTCGGTTTGGCGAAATTGTATGATCGTGGTGCCGATCCTCGAACCACCAACGTCGTTGGAACTCTTGGGTATTTAGCACCAGAGCTGATGAGAACAGGGAGAGCCACGACGAAATCAGATGTATACGCATTCGGAGCATTTCTTCTTGAAGTGGCATGCGGAAGTAGACCAGTTCAACAACGAGACGAAGCTGATGATTTCGTGTTAATGGATTGGGTTTTTTCTTGTTGGACTAGCGGGAACATTCTCCTAACCGCCGACCCTAAATTACGTGGGAATTTTGAACCTTCGGAGCTCGAATTGGTGCTAAAACTTGGGTTGCTATGTTCCCATTCCTCGCCCGCAGTTCGCCCCACCATGCACCAGGTTCTGCAGTATTTGGAGGCCGATTCGCCGCTGCCGGACCTCGCCTTGCTTCGTTGGCGGCTCTCTGGTAGTGGCTTCTTGAACTTGATGCGTCGGCATCGCGACGGCAATGACACCTGCAATGGGTTGGATGATATATCCATAGTCTCCATGAAACAAACATCTCTTGACAAGAAGACGTGCTTGGTCTAA 2013 46.3 MASILIFTLIVSISICVASDDANFTFNGFRSGDLFLDGVANTSNGLLILTNYDTDQEIGHAFYPNSISFKNKKSNNSSVSSFSATFVFAISSNLNAPGHGIAFVISPTRGIPGARSSQSLGLFNESNNGKETNHIFAVELDTIENKELGDINKNHVGIDINGLVSKKQFRAGYYVEGEFRNLTLTSGEAMQVWVEYDGFEKLITVTMAPIDIIDKPETPLLSLMQDLSSVFNDIMYVGFSSSTGSSKTWHYILGWSFTINGQAQRLDLSQLPKLPPAKTPTSKLLTIGLPSICASVAFMAAFGVIYFLYRRRKFAEILEDWEEEYGPIRFKYKNLFKATKGFREKHILGVGGFGRVYKGVLPNSKIEVAVKKISHESKQGMKEFVAEIVSVGHLRHRNVVGLLGYCRRKGELFLVYEYMKNGSLDKYLYDRPETTVNWEQRFEIIKGVASGLFYLHEQCEQVVIHRDVKASNVLLDEEFNARLGDFGLAKLYDRGADPRTTNVVGTLGYLAPELMRTGRATTKSDVYAFGAFLLEVACGSRPVQQRDEADDFVLMDWVFSCWTSGNILLTADPKLRGNFEPSELELVLKLGLLCSHSSPAVRPTMHQVLQYLEADSPLPDLALLRWRLSGSGFLNLMRRHRDGNDTCNGLDDISIVSMKQTSLDKKTCLV 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17653213 17656077 - Sed0022340.1 Sed03g2297 707784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2297 670 FunFam L-type lectin-domain containing receptor kinase V.9 21 264 - -
Sed03g2297 670 Gene3D Phosphorylase Kinase; domain 1 328 418 - -
Sed03g2297 670 SUPERFAMILY Protein kinase-like (PK-like) 323 617 IPR011009 -
Sed03g2297 670 ProSiteProfiles Protein kinase domain profile. 342 618 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2297 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2297 670 ProSitePatterns Protein kinases ATP-binding region signature. 348 372 IPR017441 GO:0005524(InterPro)
Sed03g2297 670 CDD lectin_legume_LecRK_Arcelin_ConA 23 261 IPR001220 GO:0030246(InterPro)
Sed03g2297 670 PANTHER - 24 619 IPR050528 GO:0002229(PANTHER)|GO:0004675(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
Sed03g2297 670 Gene3D - 20 271 - -
Sed03g2297 670 FunFam Lectin-domain containing receptor kinase A4.3 327 418 - -
Sed03g2297 670 Pfam Protein kinase domain 343 610 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2297 670 CDD STKc_IRAK 348 613 - -
Sed03g2297 670 SMART serkin_6 342 612 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2297 670 Pfam Legume lectin domain 22 272 IPR001220 GO:0030246(InterPro)
Sed03g2297 670 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 277 IPR013320 -
Sed03g2297 670 FunFam L-type lectin-domain containing receptor kinase S.4 419 624 - -
Sed03g2297 670 Gene3D Transferase(Phosphotransferase) domain 1 419 622 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2297 Sed-Chr3:17653213 Sed14g0524 Sed-Chr14:5196773 2.80E-268 dispersed
Sed03g2296 Sed-Chr3:17633493 Sed03g2297 Sed-Chr3:17653213 2.10E-303 tandem
Sed03g2297 Sed-Chr3:17653213 Sed03g2298 Sed-Chr3:17691314 6.30E-127 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78919 PF00069 Pkinase 1.70E-50 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2297 - - - 0.0