Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2320 ATGGCTGAGGGTTTCGAACTGTACCATGTCCCACAACAAAGCCGAAGAGATAAGCTTCGAGTCGGTATCGGCAGCGGCAGCAGTAGTAGTAGCAATAATAATCATAATCATAATCATAATTTTCATATGATTCCTTCCTATGATCCCTCTTCCTTAATCTCCTCCGATTTCGATTTCCACCCGCTTTCTCAAAACCCCTCTTTTCAACTTCATCATCATATTATTAACAGCAATTACTCTTCGCTCCTCGGCCCCGACCAACCGTTATCTCTCGAGCTTAACCTCCAACAGCGCTATGCCTCCGCGGCAGCAGCAGCAACGGCAGCTTCTGCCCTTCCTCTCGTTGGCTACTCGGCCTCCGATTTGAAGGGCTCCAAATTCTTGAATCCGGCTCAGGAGCTGCTCCACGACCTCTTCGACTACAACGGTCAAAACCCCGATAACTTCCCGCCCGATTCAACCGTTGTCGACCCTCTCCTTCAATGCTTGGGCGGTGACATCCCCGCCGGAGCCGCCGATCAGGATCCGGTCAGCTCCGTCGGCGATGGAGCTGACGGCCGGAGGAAAAAATCAAGTCTTGTTACCATGCTGGATGAGGTTTACAGAAGATATAAGCTTTATTATCAGCAGATGCAAGAAGTGGTTACAGCATTCGAATACGTTGCAGGGCTTGGCAATGCTGCTCCCTTCGTGAACTTAGCCGTAAAATCCATGTTTAAGCATTTCAGGTTCTTAAAGAACGCCATTGCTGACCAGCTCCAGTTCAACAAGCACCAGCACCCGCAGCCTTACACCCCGCATAGCTCGAGATCCATTCAAAACAGCAATGCCGCATTCCTCGACCCCCAACCCGTCTGGCGACCACAGCGGGGCCTCCCCGAGAGTGCTGTCACCATCCTCCGAGCTTGGCTCTTCGAACATTTTCTCCATCCTTATCCTACTGACACTGACAAGCTCGTGCTGGCTAGCCAAACCGGTCTCTCCAGAAGCCAGGTATCAAACTGGTTCATCAATGCAAGAGTGAGGCTTTGGAAGCCAATGGTGGAAGAAATCCACATGTTAGAAACAAGGCAAGCTCAGAAATCTCAGCTGAGGGAACCCAATAATGGTAATGCCTTAATGAACGAGTCGATCAAACCCAAGCACAACAACAACAGCAACAACAACAATAATAACGCATCTTTTTCGAATCACGATCACCACCCACTGAACTTGTCCAACTCGAACTTCTTTCCAATCCACCCCGGAGCAGCCACAATGGGCGGCAGCAATGTGTCGCTAACTCTCGGGCTCCACCAGAACCACGGCGGGATCACTCTCACGGAGCCGTTTCCGATTAATGCAGCTCAGCATTTTAACCTTGGGTTAGAAGCCAATGGTGAAGGGTTCGTAAATGAGTGGTTTTGA 1407 50.25 MAEGFELYHVPQQSRRDKLRVGIGSGSSSSSNNNHNHNHNFHMIPSYDPSSLISSDFDFHPLSQNPSFQLHHHIINSNYSSLLGPDQPLSLELNLQQRYASAAAAATAASALPLVGYSASDLKGSKFLNPAQELLHDLFDYNGQNPDNFPPDSTVVDPLLQCLGGDIPAGAADQDPVSSVGDGADGRRKKSSLVTMLDEVYRRYKLYYQQMQEVVTAFEYVAGLGNAAPFVNLAVKSMFKHFRFLKNAIADQLQFNKHQHPQPYTPHSSRSIQNSNAAFLDPQPVWRPQRGLPESAVTILRAWLFEHFLHPYPTDTDKLVLASQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKSQLREPNNGNALMNESIKPKHNNNSNNNNNNASFSNHDHHPLNLSNSNFFPIHPGAATMGGSNVSLTLGLHQNHGGITLTEPFPINAAQHFNLGLEANGEGFVNEWF 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18239033 18243906 - Sed0014943.1 Sed03g2320 707807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2320 468 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 69 393 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed03g2320 468 Pfam Homeobox KN domain 303 342 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed03g2320 468 Pfam Associated with HOX 122 250 IPR006563 -
Sed03g2320 468 MobiDBLite consensus disorder prediction 359 401 - -
Sed03g2320 468 SMART prehox3 115 251 IPR006563 -
Sed03g2320 468 FunFam BEL1-like homeodomain protein 9 289 351 - -
Sed03g2320 468 SMART HOX_1 286 350 IPR001356 GO:0003677(InterPro)
Sed03g2320 468 CDD homeodomain 286 347 IPR001356 GO:0003677(InterPro)
Sed03g2320 468 Gene3D - 289 351 - -
Sed03g2320 468 ProSiteProfiles 'Homeobox' domain profile. 283 346 IPR001356 GO:0003677(InterPro)
Sed03g2320 468 MobiDBLite consensus disorder prediction 16 36 - -
Sed03g2320 468 SUPERFAMILY Homeodomain-like 288 353 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2320 Sed-Chr3:18239033 Sed11g1294 Sed-Chr11:28669622 6.70E-59 dispersed
Sed14g0506 Sed-Chr14:5016049 Sed03g2320 Sed-Chr3:18239033 6.00E-155 wgd
Sed03g2320 Sed-Chr3:18239033 Sed04g1226 Sed-Chr4:25799266 3.20E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37928 PF07526 POX 1.40E-30 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2320 - - - 0.0