Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g2320 | ATGGCTGAGGGTTTCGAACTGTACCATGTCCCACAACAAAGCCGAAGAGATAAGCTTCGAGTCGGTATCGGCAGCGGCAGCAGTAGTAGTAGCAATAATAATCATAATCATAATCATAATTTTCATATGATTCCTTCCTATGATCCCTCTTCCTTAATCTCCTCCGATTTCGATTTCCACCCGCTTTCTCAAAACCCCTCTTTTCAACTTCATCATCATATTATTAACAGCAATTACTCTTCGCTCCTCGGCCCCGACCAACCGTTATCTCTCGAGCTTAACCTCCAACAGCGCTATGCCTCCGCGGCAGCAGCAGCAACGGCAGCTTCTGCCCTTCCTCTCGTTGGCTACTCGGCCTCCGATTTGAAGGGCTCCAAATTCTTGAATCCGGCTCAGGAGCTGCTCCACGACCTCTTCGACTACAACGGTCAAAACCCCGATAACTTCCCGCCCGATTCAACCGTTGTCGACCCTCTCCTTCAATGCTTGGGCGGTGACATCCCCGCCGGAGCCGCCGATCAGGATCCGGTCAGCTCCGTCGGCGATGGAGCTGACGGCCGGAGGAAAAAATCAAGTCTTGTTACCATGCTGGATGAGGTTTACAGAAGATATAAGCTTTATTATCAGCAGATGCAAGAAGTGGTTACAGCATTCGAATACGTTGCAGGGCTTGGCAATGCTGCTCCCTTCGTGAACTTAGCCGTAAAATCCATGTTTAAGCATTTCAGGTTCTTAAAGAACGCCATTGCTGACCAGCTCCAGTTCAACAAGCACCAGCACCCGCAGCCTTACACCCCGCATAGCTCGAGATCCATTCAAAACAGCAATGCCGCATTCCTCGACCCCCAACCCGTCTGGCGACCACAGCGGGGCCTCCCCGAGAGTGCTGTCACCATCCTCCGAGCTTGGCTCTTCGAACATTTTCTCCATCCTTATCCTACTGACACTGACAAGCTCGTGCTGGCTAGCCAAACCGGTCTCTCCAGAAGCCAGGTATCAAACTGGTTCATCAATGCAAGAGTGAGGCTTTGGAAGCCAATGGTGGAAGAAATCCACATGTTAGAAACAAGGCAAGCTCAGAAATCTCAGCTGAGGGAACCCAATAATGGTAATGCCTTAATGAACGAGTCGATCAAACCCAAGCACAACAACAACAGCAACAACAACAATAATAACGCATCTTTTTCGAATCACGATCACCACCCACTGAACTTGTCCAACTCGAACTTCTTTCCAATCCACCCCGGAGCAGCCACAATGGGCGGCAGCAATGTGTCGCTAACTCTCGGGCTCCACCAGAACCACGGCGGGATCACTCTCACGGAGCCGTTTCCGATTAATGCAGCTCAGCATTTTAACCTTGGGTTAGAAGCCAATGGTGAAGGGTTCGTAAATGAGTGGTTTTGA | 1407 | 50.25 | MAEGFELYHVPQQSRRDKLRVGIGSGSSSSSNNNHNHNHNFHMIPSYDPSSLISSDFDFHPLSQNPSFQLHHHIINSNYSSLLGPDQPLSLELNLQQRYASAAAAATAASALPLVGYSASDLKGSKFLNPAQELLHDLFDYNGQNPDNFPPDSTVVDPLLQCLGGDIPAGAADQDPVSSVGDGADGRRKKSSLVTMLDEVYRRYKLYYQQMQEVVTAFEYVAGLGNAAPFVNLAVKSMFKHFRFLKNAIADQLQFNKHQHPQPYTPHSSRSIQNSNAAFLDPQPVWRPQRGLPESAVTILRAWLFEHFLHPYPTDTDKLVLASQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKSQLREPNNGNALMNESIKPKHNNNSNNNNNNASFSNHDHHPLNLSNSNFFPIHPGAATMGGSNVSLTLGLHQNHGGITLTEPFPINAAQHFNLGLEANGEGFVNEWF | 468 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 18239033 | 18243906 | - | Sed0014943.1 | Sed03g2320 | 707807 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g2320 | 468 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 69 | 393 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed03g2320 | 468 | Pfam | Homeobox KN domain | 303 | 342 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed03g2320 | 468 | Pfam | Associated with HOX | 122 | 250 | IPR006563 | - | |
Sed03g2320 | 468 | MobiDBLite | consensus disorder prediction | 359 | 401 | - | - | |
Sed03g2320 | 468 | SMART | prehox3 | 115 | 251 | IPR006563 | - | |
Sed03g2320 | 468 | FunFam | BEL1-like homeodomain protein 9 | 289 | 351 | - | - | |
Sed03g2320 | 468 | SMART | HOX_1 | 286 | 350 | IPR001356 | GO:0003677(InterPro) | |
Sed03g2320 | 468 | CDD | homeodomain | 286 | 347 | IPR001356 | GO:0003677(InterPro) | |
Sed03g2320 | 468 | Gene3D | - | 289 | 351 | - | - | |
Sed03g2320 | 468 | ProSiteProfiles | 'Homeobox' domain profile. | 283 | 346 | IPR001356 | GO:0003677(InterPro) | |
Sed03g2320 | 468 | MobiDBLite | consensus disorder prediction | 16 | 36 | - | - | |
Sed03g2320 | 468 | SUPERFAMILY | Homeodomain-like | 288 | 353 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2320 | Sed-Chr3:18239033 | Sed11g1294 | Sed-Chr11:28669622 | 6.70E-59 | dispersed | |
Sed14g0506 | Sed-Chr14:5016049 | Sed03g2320 | Sed-Chr3:18239033 | 6.00E-155 | wgd | |
Sed03g2320 | Sed-Chr3:18239033 | Sed04g1226 | Sed-Chr4:25799266 | 3.20E-93 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37928 | PF07526 | POX | 1.40E-30 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g2320 | - | - | - | 0.0 |