Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g2328 | ATGGAAGATGAAGGAGTGCAGGTGTTTGGGTTCTGGGCAAGTCCCTTCAGTCGCAGAGTGGAATTGGCTCTGAAACTCAAAGGCGTCCAATACCAATACATTGAGGAAGATGTGATGAACAAGAAGAGCGATCTACTTGTCAAATATAACCCAATCTATAAGAAGGTGCCTGTCCTTATTCACCATGGCAACCCCATTGCCGAGTCCCTTGTCCTTCTCGAGTACGTCGACGAGTACTGGGGATCGAACAACCCTATCTTGCCTAGAGATTGCCATCAAAGAGCTCTTGCCAGGTTTTGGGCAGCATATATCGATGGCAAGGTTGCATCTGCAGTAAACAAAGCAGCTAGAAGTAAAGGAGAAGAAACAGAGAAGGCAGTAGAGGAATTACAAGAGGCTTTGGCACCACTTGAGAATGAGATTAAAGGCAACAAGTTCTTTGGAGGAGACACCATTGGGTTTTTGGACATTGTAGGCATTGTTTTAGCCTACTGGTTTCCTGCCATTGAAGAGGCTATAGGGCTTGAGTTCATGGGAGCACACAAATTTCCAAACCTAAGGCAATGGAGTCATGACCTTTCCAACCACACCCTTGTCAAGGAGGTTCTGCCTCAAAAGGATGAGCTTGTTGCCTATTTGCAACCTATTTTTCACAAAAACTAG | 663 | 45.4 | MEDEGVQVFGFWASPFSRRVELALKLKGVQYQYIEEDVMNKKSDLLVKYNPIYKKVPVLIHHGNPIAESLVLLEYVDEYWGSNNPILPRDCHQRALARFWAAYIDGKVASAVNKAARSKGEETEKAVEELQEALAPLENEIKGNKFFGGDTIGFLDIVGIVLAYWFPAIEEAIGLEFMGAHKFPNLRQWSHDLSNHTLVKEVLPQKDELVAYLQPIFHKN | 220 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 18575298 | 18576489 | + | Sed0001402.1 | Sed03g2328 | 707815 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g2328 | 220 | Gene3D | Glutaredoxin | 1 | 86 | - | - | |
Sed03g2328 | 220 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 90 | 213 | IPR010987 | - | |
Sed03g2328 | 220 | CDD | GST_C_Tau | 92 | 214 | IPR045074 | GO:0004364(InterPro)|GO:0006749(InterPro) | |
Sed03g2328 | 220 | Pfam | Glutathione S-transferase, C-terminal domain | 99 | 195 | IPR004046 | - | |
Sed03g2328 | 220 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 4 | 84 | IPR004045 | - | |
Sed03g2328 | 220 | SUPERFAMILY | GST C-terminal domain-like | 78 | 217 | IPR036282 | - | |
Sed03g2328 | 220 | Gene3D | - | 87 | 219 | - | - | |
Sed03g2328 | 220 | Coils | Coil | 113 | 140 | - | - | |
Sed03g2328 | 220 | Pfam | Glutathione S-transferase, N-terminal domain | 6 | 78 | IPR004045 | - | |
Sed03g2328 | 220 | FunFam | Tau class glutathione S-transferase | 1 | 89 | - | - | |
Sed03g2328 | 220 | SFLD | Glutathione Transferase (cytosolic) | 2 | 216 | IPR040079 | - | |
Sed03g2328 | 220 | FunFam | Tau class glutathione S-transferase | 87 | 220 | - | - | |
Sed03g2328 | 220 | SUPERFAMILY | Thioredoxin-like | 6 | 107 | IPR036249 | - | |
Sed03g2328 | 220 | CDD | GST_N_Tau | 6 | 80 | - | - | |
Sed03g2328 | 220 | SFLD | Main.3: Omega- and Tau-like | 2 | 216 | IPR045073 | - | |
Sed03g2328 | 220 | PANTHER | GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING | 6 | 214 | IPR045073 | GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2328 | Sed-Chr3:18575298 | Sed14g0672 | Sed-Chr14:6755120 | 2.40E-75 | dispersed | |
Sed03g2328 | Sed-Chr3:18575298 | Sed03g2329 | Sed-Chr3:18578405 | 7.00E-67 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g2328 | K00799 | - | csv:105434443 | 321.627 |