Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2328 ATGGAAGATGAAGGAGTGCAGGTGTTTGGGTTCTGGGCAAGTCCCTTCAGTCGCAGAGTGGAATTGGCTCTGAAACTCAAAGGCGTCCAATACCAATACATTGAGGAAGATGTGATGAACAAGAAGAGCGATCTACTTGTCAAATATAACCCAATCTATAAGAAGGTGCCTGTCCTTATTCACCATGGCAACCCCATTGCCGAGTCCCTTGTCCTTCTCGAGTACGTCGACGAGTACTGGGGATCGAACAACCCTATCTTGCCTAGAGATTGCCATCAAAGAGCTCTTGCCAGGTTTTGGGCAGCATATATCGATGGCAAGGTTGCATCTGCAGTAAACAAAGCAGCTAGAAGTAAAGGAGAAGAAACAGAGAAGGCAGTAGAGGAATTACAAGAGGCTTTGGCACCACTTGAGAATGAGATTAAAGGCAACAAGTTCTTTGGAGGAGACACCATTGGGTTTTTGGACATTGTAGGCATTGTTTTAGCCTACTGGTTTCCTGCCATTGAAGAGGCTATAGGGCTTGAGTTCATGGGAGCACACAAATTTCCAAACCTAAGGCAATGGAGTCATGACCTTTCCAACCACACCCTTGTCAAGGAGGTTCTGCCTCAAAAGGATGAGCTTGTTGCCTATTTGCAACCTATTTTTCACAAAAACTAG 663 45.4 MEDEGVQVFGFWASPFSRRVELALKLKGVQYQYIEEDVMNKKSDLLVKYNPIYKKVPVLIHHGNPIAESLVLLEYVDEYWGSNNPILPRDCHQRALARFWAAYIDGKVASAVNKAARSKGEETEKAVEELQEALAPLENEIKGNKFFGGDTIGFLDIVGIVLAYWFPAIEEAIGLEFMGAHKFPNLRQWSHDLSNHTLVKEVLPQKDELVAYLQPIFHKN 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18575298 18576489 + Sed0001402.1 Sed03g2328 707815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2328 220 Gene3D Glutaredoxin 1 86 - -
Sed03g2328 220 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 213 IPR010987 -
Sed03g2328 220 CDD GST_C_Tau 92 214 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Sed03g2328 220 Pfam Glutathione S-transferase, C-terminal domain 99 195 IPR004046 -
Sed03g2328 220 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 84 IPR004045 -
Sed03g2328 220 SUPERFAMILY GST C-terminal domain-like 78 217 IPR036282 -
Sed03g2328 220 Gene3D - 87 219 - -
Sed03g2328 220 Coils Coil 113 140 - -
Sed03g2328 220 Pfam Glutathione S-transferase, N-terminal domain 6 78 IPR004045 -
Sed03g2328 220 FunFam Tau class glutathione S-transferase 1 89 - -
Sed03g2328 220 SFLD Glutathione Transferase (cytosolic) 2 216 IPR040079 -
Sed03g2328 220 FunFam Tau class glutathione S-transferase 87 220 - -
Sed03g2328 220 SUPERFAMILY Thioredoxin-like 6 107 IPR036249 -
Sed03g2328 220 CDD GST_N_Tau 6 80 - -
Sed03g2328 220 SFLD Main.3: Omega- and Tau-like 2 216 IPR045073 -
Sed03g2328 220 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 214 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2328 Sed-Chr3:18575298 Sed14g0672 Sed-Chr14:6755120 2.40E-75 dispersed
Sed03g2328 Sed-Chr3:18575298 Sed03g2329 Sed-Chr3:18578405 7.00E-67 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2328 K00799 - csv:105434443 321.627