Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2329 ATGGGAGAAAATGTGGAGGTGTTTGGGGCATGGTTTAGCCCTTTCAGCAAGCGAGTGGAATTGGCTTTGAAATTGAAGGGCATTCAATACCATTACATTGAAGAAGATATATACAAGGAAAAGAGCCATTTGATACAAAAATATAACCCTGTTTACAAGAAGGTTCCCGTGTTCGTCCATGGCGGAAACCCGATCGCAGAGTCCACTGTGATCCTTCGGTATATAGACGAAACTTGGAAGGACAATCCTCTTTTGCCTCAAGACCCCTATCAGAAATCTTTGGCACTCTTTTGGGCCAAATTCTTGGATGAAAAGGTACTACCAGCATTAATCAAAGCGAGGAGAAGCCATGGAAACGAGAAAGAAGAAGCCATAGCGGAGGCAAGCATTGCATTAAGAGCACTCGAAAAGGAGTTAGAAGGGAAGAGATTCTTTGGAGGGGAGACGCTGGGATTCGTCGACATAGTTGCGAACTTCGTAGCATATTGGAGTCCAGCCATGGAAGAAGCTTTAGGTGTGCAACTACTAACCACGGCACTGCAACAACTTCCAAGGCTTCGCCAATGGTGCCATCACTTTGTTGAACACACCATTGTAAAACAGACTCTGTCCCCCAAACCTCAACTTCTTGCCTTTATATCGTCTCAGTTTGGAGCCAATTATGTTGCGTCTAAATGA 678 44.69 MGENVEVFGAWFSPFSKRVELALKLKGIQYHYIEEDIYKEKSHLIQKYNPVYKKVPVFVHGGNPIAESTVILRYIDETWKDNPLLPQDPYQKSLALFWAKFLDEKVLPALIKARRSHGNEKEEAIAEASIALRALEKELEGKRFFGGETLGFVDIVANFVAYWSPAMEEALGVQLLTTALQQLPRLRQWCHHFVEHTIVKQTLSPKPQLLAFISSQFGANYVASK 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18578405 18579815 + Sed0024232.1 Sed03g2329 707816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2329 225 CDD GST_N_Tau 5 79 - -
Sed03g2329 225 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Sed03g2329 225 SFLD Main.3: Omega- and Tau-like 3 215 IPR045073 -
Sed03g2329 225 FunFam Tau class glutathione S-transferase 85 222 - -
Sed03g2329 225 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 83 IPR004045 -
Sed03g2329 225 Pfam Glutathione S-transferase, C-terminal domain 106 195 IPR004046 -
Sed03g2329 225 Coils Coil 118 138 - -
Sed03g2329 225 SUPERFAMILY Thioredoxin-like 4 106 IPR036249 -
Sed03g2329 225 CDD GST_C_Tau 89 213 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Sed03g2329 225 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 217 IPR010987 -
Sed03g2329 225 SUPERFAMILY GST C-terminal domain-like 77 214 IPR036282 -
Sed03g2329 225 Gene3D Glutaredoxin 1 84 - -
Sed03g2329 225 Gene3D - 85 221 - -
Sed03g2329 225 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 214 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Sed03g2329 225 SFLD Glutathione Transferase (cytosolic) 3 215 IPR040079 -
Sed03g2329 225 FunFam Glutathione S-transferase GSTU6 1 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2329 Sed-Chr3:18578405 Sed06g0723 Sed-Chr6:7071607 3.30E-88 dispersed
Sed03g2329 Sed-Chr3:18578405 Sed03g2333 Sed-Chr3:18685475 1.00E-60 proximal
Sed03g2328 Sed-Chr3:18575298 Sed03g2329 Sed-Chr3:18578405 7.00E-67 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2329 K00799 - csv:101214027 338.961