Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2333 ATGGCGGAACAGCTACAACTCTTCGGGTTCCGATCGGGCCCCTTCAGTTTGAGAGTGGAGTTGGCTCTCAAACTCAAAGGCGTCGATTACGAACACATCGAAGAAGATTTGCTCAACAACAACAAAAGCGATTTGCTTTTGCAATACAACCCAGTTTACCAGAAGGTGCCTGTTCTCGTCCATAATGGCAACCCCATTTCGGAGTCGCTGGTCATCCTTGAATACATCGAACAAGTTTGGACTCAAAATCCTATCTTTCCACAAGACCCCTACCACAAATCTCTTGCTAGGTTTTGGGCCAAGTATATGGATGATAAGGTTTTGCCTATAATGAAGAAAATTGCACAAAGCAAGGAAGAAGAGAGGGAGAAAGTTATAGAAGAAGGGCAGGAGGCATTGGAACCATTAGAGAAAGAGCTTGGAAACAAGAAATTCTTCTTTGGAGATGAAATTGGATTTGTGGACATTGTAGGCATTGTTATAGCCTGTTGGATACCTGCCAGTGAAGAAGCTTTAGGTTTTGAGTTGCTAATAAGTCACAAGTTCCCAAAGTTAAAAGCATGGAGTGAAGAGTTTGTGAACCATAGTGTGGCCAAGTTGGTGTTGCCCCAAAAGGATGTGCTTGTTGCCTTTTTGAAAATGGTTACCTCTAATCCCAAAAACTAA 666 42.64 MAEQLQLFGFRSGPFSLRVELALKLKGVDYEHIEEDLLNNNKSDLLLQYNPVYQKVPVLVHNGNPISESLVILEYIEQVWTQNPIFPQDPYHKSLARFWAKYMDDKVLPIMKKIAQSKEEEREKVIEEGQEALEPLEKELGNKKFFFGDEIGFVDIVGIVIACWIPASEEALGFELLISHKFPKLKAWSEEFVNHSVAKLVLPQKDVLVAFLKMVTSNPKN 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18685475 18689474 + Sed0023394.1 Sed03g2333 707820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2333 221 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 213 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Sed03g2333 221 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 209 IPR010987 -
Sed03g2333 221 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 84 IPR004045 -
Sed03g2333 221 FunFam Tau class glutathione S-transferase 1 88 - -
Sed03g2333 221 Pfam Glutathione S-transferase, N-terminal domain 4 77 IPR004045 -
Sed03g2333 221 SUPERFAMILY GST C-terminal domain-like 78 215 IPR036282 -
Sed03g2333 221 Pfam Glutathione S-transferase, C-terminal domain 98 194 IPR004046 -
Sed03g2333 221 Gene3D - 86 220 - -
Sed03g2333 221 FunFam Tau class glutathione S-transferase 86 221 - -
Sed03g2333 221 CDD GST_N_Tau 5 80 - -
Sed03g2333 221 Gene3D Glutaredoxin 1 85 - -
Sed03g2333 221 SFLD Main.3: Omega- and Tau-like 2 216 IPR045073 -
Sed03g2333 221 CDD GST_C_Tau 90 213 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Sed03g2333 221 SFLD Glutathione Transferase (cytosolic) 2 216 IPR040079 -
Sed03g2333 221 SUPERFAMILY Thioredoxin-like 4 107 IPR036249 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2333 Sed-Chr3:18685475 Sed14g0672 Sed-Chr14:6755120 2.00E-69 dispersed
Sed03g2329 Sed-Chr3:18578405 Sed03g2333 Sed-Chr3:18685475 1.00E-60 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2333 K00799 - csv:101215228 310.457