Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2353 ATGAAGAACAGCAGCGCTAGGAAAGGCCGACCGCCGCCGCAGAACCCAACGCCGCCGCCGCCGGCGAAGCACCAGGCGCTCTCTCAGGAGGAAGATTTCGCCGACGAGGATGTCTTCCTCGACGAGGACGCTCTCATCCTCCGCGACATGGAGGAGCGCCAGGCCCTCGCTGCCCGTCCCTCCAAGTGGGCTCGCCCGCCACTTTCACAAGATTATGTCTCCCAGTCCACCACCATCGTGTTTCAGCAATTGGAGATTGATTATGTGATTGTGGAAAGCCATAGAGAATTGTTGCCCAATTTGTCTGGCCCTGCTGCTATTCTCAGAATTTTTGGGGTTACGAGGGAAGGACATAGTGTGTGCTGCCATGTTCATGGATTTGAACCATACTTCTATATCAGTTGCCCTCCAGGAATGGGTCCTGATGATATCTCTCTTTTTCACCAAGTACTTGAGGCTAGAATGAAGGAGGTAAATAGGAACAGCAAGACACCTAGTTTTGTGCGCCGTATAGAATTGGTGCAAAAGAGAAGTATTATGTACTACCAGCAGCAGACCTCTCAACCTTTTCTTAAAATTGTAGTTGCACTGCCAACAATGGTCGCCAGCTGTCGTGGTATTCTTGACAAAGGCATACAGATCGATGGTTTTGGTATGAAGAGATTTATGACATATGAAAGCAATGTGCTTTTTGCCCTCCGTTTTATGATTGATTGTAATGTTGTTGGTGGAAACTGGATTGAGGTTCCCGTGGGAAAATATAAGAAAACTGTTAGAAATTTATCATATTGCCAATTGGAGTTTGATTGCTTATATTCAGACTTGATCAGTCATGCTCCAGAAGGGGAATTTTCCAAAATGGCTCCATTTCGGATATTGAGTTTTGATATTGAGTGTGCAGGGCGTAAGGGTCATTTTCCCGAGCCTACCCAGGATCCTGTGATTCAGGTGGCAAACCTAGTTACTTTGCAGGGAGTGGACCAACCATTTATTCGCAATGTCATGACCCTTAACTCTTGCTCTTCAATTGCGGGCGTTGATGTCTTATCATTTGATACGGAACGTGAAGTTTTGTTGGCTTGGAGGGATCTAATACGTGAAGTAGACCCTGATATAATAATTGGATATAATATCTGCAAATTTGATTTGCCATATCTAATCGAGAGAGCCGAGGCATTGAAAATAGCAGAATTTCCAATATTGGGTCGAATCAGGAATAGCAAAGTTCGTGTCAAAGACACAACTTTTTCTTCAAGACAGCTTGGAACAAGGGAGAGTAAAGAAATAACGGTGGAAGGAAGAGTTCAATTTGATTTGCTTCAGGCAGTGCAACGTGATTATAAATTAAGTTCCTACTCGTTGAATTCTGTTTCTTCACATTTCCTTTCTGAACAGAAAGAGGATGTCCACCATTCAATAATATCGGATCTTCAAAAAGGTAATGCAGAAACACGGAGACGTCTTGCTGTTTATTGTTTAAAGGATGCATATCTTCCACAACGACTTTTAGACAAACTGATGTTCATGTACAATTATGTGGAGATGGCTCGAGTAACTGGTGTTCCTATTTCTTTTCTTCTTTCAAGAGGGCAAAGCATCAAGGTACTCTCTCAACTCCTCAGGAAGGCAAAACAGAAGAACCTTGTTATTCCGAATGCTAAACAGGCTGGTTCTGATCAAGGAACCTACGAGGGTGCTACTGTTTTGGAAGCGAGGGCTGGGTTCTATGAGAAGCCCATTGCTACACTGGATTTTGCTTCTCTGTATCCATCCATCATGATGGCATATAATTTGTGTTATTGCACTCTGGTGACTCCAGAAGATGCTCGTAAGCTAAACCTGCCCCCTGAACATTTCAATAAAACCCCATCTGGAGAGATCTTTGTCAAGGCAAATTTACAGAAGGGGATACTTCCTGAAATATTGGAAGAACTATTGACTGCTCGGAAAAGAGCAAAAGCAGATTTGAAGGAAGCAAAGGATCCTTTTGAGAAGGCTGTGTTGGATGGCCGACAGCTAGCTCTGAAGATAAGTGCAAATTCTGTGTACGGGTTTACAGGAGCTACTGTTGGTCAGTTACCATGTTTAGAGATATCATCAAGTGTTACAAGCTATGGTCGACAAATGATTGAGCACACAAAGAAGCTCGTGGAAGATAAATTTACAACACTTGGGGGCTATGAGCACAATGCTGAGGTGATCTATGGTGATACAGATTCCATTATGGTACAATTTGGTGTGTCCAGTGTAGAAGCAGCAATGATCTTGGGTAGGGAAGCAGCTGACTATATCAGTGGTACTTTCATAAAACCCATCAAGTTAGAGTTTGAGAAGGTTTATTATCCATATCTGTTGATTAGTAAGAAGAGATACGCTGGTTTATATTGGACTAATCCAAACAAGTTTGACAAGATGGATACCAAGGGTATTGAAACCGTTCGAAGAGATAATTGCTTATTGGTGAAAAACCTTGTGAATGAGTGCTTGCATAAACTTCTTATTGATAGAGATGTCCCTGGGGCAGTTCAATATGTGAAGAACACGATTTCAGATCTGCTTATGAACCGTGTGGATTTATCACTCTTGGTTATCACTAAGGGACTGACAAAAACGGGAGATGATTACGAAGTGAAGGCAGCGCATGTTGAACTTGCTGAGCGCATGCGTAAGCGAGATGCAGCCACTGCTCCAAATGTTGGTGATCGAGTACCTTACGTGATCATTAAAGCTGCAAAAGGTGCCAAGGCATACGAGAAATCAGAGGATCCCATTTATGTCCTAGAGAATAGCATACCAATAGACCCTCAGTACTATCTCGAGAATCAGATTAGCAAGCCTCTTCTACGAATTTTTGAGCCCATCTTGAAAAATGCTAGCAAGGAACTTCTACATGGAAGTCACACGAGATCAATTTTTATTTCTACTCCTTCAAACAGCGGCATAATGAAATTTGCTAAGAAACAGCTTACCTGCATTGGCTGCAAGGCTCTATTAGGCAAGGCAGACAAAACTCTCTGCGCACACTGCAAAGGAAGAGAAGCTGAACTTTACTGCAAAGCGGTAGCAAATGTGTCTGATTTGGAGATGGTTTTTGGGAGGCTTTGGACTCAGTGCCAAGAATGCCAAGGGTCCCTTCACCAAGATGTCCTATGTACGAGTCGAGACTGTCCAATATTTTATCGAAGAAAGAAGGCACAAAAAGACATGGCCGAAGCTAAACAGCATTTGGAGCGTTGGAGTTTCTAA 3246 43.13 MKNSSARKGRPPPQNPTPPPPAKHQALSQEEDFADEDVFLDEDALILRDMEERQALAARPSKWARPPLSQDYVSQSTTIVFQQLEIDYVIVESHRELLPNLSGPAAILRIFGVTREGHSVCCHVHGFEPYFYISCPPGMGPDDISLFHQVLEARMKEVNRNSKTPSFVRRIELVQKRSIMYYQQQTSQPFLKIVVALPTMVASCRGILDKGIQIDGFGMKRFMTYESNVLFALRFMIDCNVVGGNWIEVPVGKYKKTVRNLSYCQLEFDCLYSDLISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTQDPVIQVANLVTLQGVDQPFIRNVMTLNSCSSIAGVDVLSFDTEREVLLAWRDLIREVDPDIIIGYNICKFDLPYLIERAEALKIAEFPILGRIRNSKVRVKDTTFSSRQLGTRESKEITVEGRVQFDLLQAVQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQKGNAETRRRLAVYCLKDAYLPQRLLDKLMFMYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKQAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDARKLNLPPEHFNKTPSGEIFVKANLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSIMVQFGVSSVEAAMILGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPNKFDKMDTKGIETVRRDNCLLVKNLVNECLHKLLIDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENSIPIDPQYYLENQISKPLLRIFEPILKNASKELLHGSHTRSIFISTPSNSGIMKFAKKQLTCIGCKALLGKADKTLCAHCKGREAELYCKAVANVSDLEMVFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKQHLERWSF 1081
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18986244 19011780 - Sed0004291.1 Sed03g2353 707840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2353 1081 CDD DNA_polB_delta_exo 285 513 - -
Sed03g2353 1081 Pfam DNA polymerase family B 521 954 IPR006134 GO:0000166(InterPro)|GO:0003677(InterPro)
Sed03g2353 1081 NCBIfam DNA polymerase (pol2) 345 952 - -
Sed03g2353 1081 MobiDBLite consensus disorder prediction 1 33 - -
Sed03g2353 1081 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 61 1057 IPR050240 GO:0003887(PANTHER)|GO:0006261(PANTHER)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008296(PANTHER)|GO:0043625(PANTHER)|GO:0045004(PANTHER)
Sed03g2353 1081 SMART polmehr3 288 747 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Sed03g2353 1081 Gene3D DNA Polymerase, chain B, domain 1 84 261 - -
Sed03g2353 1081 PRINTS DNA-directed DNA-polymerase family B signature 580 593 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Sed03g2353 1081 PRINTS DNA-directed DNA-polymerase family B signature 672 684 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Sed03g2353 1081 PRINTS DNA-directed DNA-polymerase family B signature 733 741 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Sed03g2353 1081 SUPERFAMILY Ribonuclease H-like 105 527 IPR012337 -
Sed03g2353 1081 Pfam DNA polymerase family B, exonuclease domain 224 457 IPR006133 -
Sed03g2353 1081 Gene3D - 809 964 IPR042087 -
Sed03g2353 1081 FunFam DNA polymerase 809 965 - -
Sed03g2353 1081 ProSitePatterns DNA polymerase family B signature. 735 743 IPR017964 GO:0000166(InterPro)|GO:0003676(InterPro)
Sed03g2353 1081 Pfam C4-type zinc-finger of DNA polymerase delta 991 1062 IPR025687 -
Sed03g2353 1081 SUPERFAMILY DNA/RNA polymerases 546 956 IPR043502 -
Sed03g2353 1081 FunFam DNA polymerase 328 562 - -
Sed03g2353 1081 Gene3D Helix hairpin bin 636 688 - -
Sed03g2353 1081 Gene3D - 289 507 IPR036397 GO:0003676(InterPro)
Sed03g2353 1081 FunFam DNA polymerase 85 260 - -
Sed03g2353 1081 CDD POLBc_delta 562 955 - -
Sed03g2353 1081 Gene3D Palm domain of DNA polymerase 562 792 IPR023211 -
Sed03g2353 1081 FunFam DNA polymerase 636 688 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0438 Sed-Chr1:3370740 Sed03g2353 Sed-Chr3:18986244 9.30E-49 dispersed
Sed03g2353 Sed-Chr3:18986244 Sed11g0358 Sed-Chr11:3364096 2.10E-87 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2353 K02327 - csv:101219332 2032.3