Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2360 ATGGTGGGTCTCGGACTACCACAAATTGCTCAAAGCTTGAGATCCCAAGCATGGAGTGATGAGGACCTTTTGGAGGCTTTAAATCAACTAGAAGAGGGGCTGAAAGATGATATCAGGAAACTAAGTTCTTTTGACAAGTATAAGCAAGAAGTCCTTCTAGGCCAACTTGACTGGTCTCCTACACAAAAGATGTTAATTTCTGGCATTTTAAGGGTCCTAATGACCATTCTGGACACTTCGAGTGACCCAAGGGCTCTGTCAGTGGCTTGCTTTGATCTTTCACAGTTCATGACAGATCTCAAGGCCAAGGAAAGAGTGATGAAACTGATGAATCATGGGAATGCTGAAGTTACCAAATACTCCCTCCTCTGCACCCAAAGAGCCAAGTATGCAAGCTAG 399 44.11 MVGLGLPQIAQSLRSQAWSDEDLLEALNQLEEGLKDDIRKLSSFDKYKQEVLLGQLDWSPTQKMLISGILRVLMTILDTSSDPRALSVACFDLSQFMTDLKAKERVMKLMNHGNAEVTKYSLLCTQRAKYAS 132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19106031 19107093 - Sed0024694.1 Sed03g2360 707847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2360 132 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 61 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed03g2360 132 Gene3D - 21 130 IPR038497 -
Sed03g2360 132 Pfam V-ATPase subunit H 40 127 IPR011987 GO:0000221(InterPro)|GO:1902600(InterPro)
Sed03g2360 132 SUPERFAMILY ARM repeat 1 127 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2360 Sed-Chr3:19106031 Sed03g3114 Sed-Chr3:47868056 6.90E-54 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2360 K02144 - csv:101217015 198.749