Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2398 ATGCATAAGCGGAACGGTAAGCAAATGGCGGAATCGGTTTCGAGCAAGATCTACAGATTCAGAGGGGTGCTTTTGCTCACCTCTCTTTCCATTGCCCTAATCGCTTTGGTTCTCTATCTCATGCCGGCCCGTGAGGATTACACCTTCAACAACCGCAAAGTTTCCTCGGATCACAGGTCGTCGTCGTCTTCTTCTAAGACCACTTTTGCTGCTATTTTTGATGCTGGCAGTTCTGGGAGTCGCGTCCATGTCTTTTGCTTTGATCATAATCTTGATCTCCTCCCCGTTGGCGAGGATATTGAACTTTTCGAACAACTTAAACCAGGATTGAGTGCATATGCTGACAACCCCAAGGATGCAGCAGCTTCTCTAGTTCCCCTTTTGGACAAAGCAGTAAATGTGGTTCCAAAAGGGCTTAGGCCAATGACCCCTGTTAGAGTTGGAGCAACTGCAGGGTTGAGGGCTCTGAAGGGTGATGCATCTGATAAAATTTTGCAGGCGGTTAGAGAGCTTCTGAGAGACAAAAGTGACCTCAGGTTGGAGAAAGATGCTGTATCTGTAATTGATGGAACTCAAGAAGGTTCTTACCTTTGGGTGACATTAAACTATCTGCTTGGGAACTTGGGTAAGAAATATTCGGACACCGTTGGAGTTGTAGATCTTGGGGGAGGATCTGTTCAAATGGCATATGCGATCTCAGAAAAGGATGCTGCTCGATTACCAGAGGCAGAGGGCAAATACATAAAAAAAATGTATCTGAAAGGAGCAACTTATTATCTCTATGTTCACAGTTATTTGCATTATGGGTTACTAGCTGCTCGAGCCGAGGTTCTGAGTGTCACTGAAGATTCTAGTAATGAATGCGTCCTATCTGGCTATGAAGGAACATACCACTACGGAGGAAAGGATTACAAAGCATCAGCCTCTGCATCAGGCTCCAGCTTGAATGGATGCAGGAGTACAGTTTTGAAGGCTCTCAAGGCCAATGGATCAACCTGTACTCACATGAAGTGCACTTTCGGTGGAGTGTGGAACGGTGGAGGAGGCGAGGGGCAGACAAATCTCTTTGTTGCATCGTTTTTCTTCGATAGGGCTGCCGAGGCTGGTTTTGCCGACCCCAATAAGCCGGTTGCTAAAGTTCACCCTTCAGACTTTCGCGAGGCAGCAAAGCAGGCATGCCAAGTCAAACTCGACGATGCTGCTACATATCCAAAGGTCGATAAGGATAACCTGCCATACTTGTGTATGGATCTTGTGTACCAATACACACTACTTGTAGATGGATTTGGCCTGGATCCTTTGCAAGAGATCACATTGGTGAAGAAGGTTCAATATCAGGATTCTTTGGTTGAAGCCGCATGGCCTTTAGGCAGTGCAATTGAAGCTGTTTCATCGTTACCCTAA 1404 46.3 MHKRNGKQMAESVSSKIYRFRGVLLLTSLSIALIALVLYLMPAREDYTFNNRKVSSDHRSSSSSSKTTFAAIFDAGSSGSRVHVFCFDHNLDLLPVGEDIELFEQLKPGLSAYADNPKDAAASLVPLLDKAVNVVPKGLRPMTPVRVGATAGLRALKGDASDKILQAVRELLRDKSDLRLEKDAVSVIDGTQEGSYLWVTLNYLLGNLGKKYSDTVGVVDLGGGSVQMAYAISEKDAARLPEAEGKYIKKMYLKGATYYLYVHSYLHYGLLAARAEVLSVTEDSSNECVLSGYEGTYHYGGKDYKASASASGSSLNGCRSTVLKALKANGSTCTHMKCTFGGVWNGGGGEGQTNLFVASFFFDRAAEAGFADPNKPVAKVHPSDFREAAKQACQVKLDDAATYPKVDKDNLPYLCMDLVYQYTLLVDGFGLDPLQEITLVKKVQYQDSLVEAAWPLGSAIEAVSSLP 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20444103 20450490 - Sed0003409.1 Sed03g2398 707885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2398 467 Gene3D Exopolyphosphatase. Domain 2 189 444 - -
Sed03g2398 467 FunFam Apyrase 1 189 444 - -
Sed03g2398 467 CDD NBD_sugar-kinase_HSP70_actin 71 230 - -
Sed03g2398 467 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 19 463 IPR000407 GO:0016787(InterPro)
Sed03g2398 467 Gene3D - 69 460 - -
Sed03g2398 467 Pfam GDA1/CD39 (nucleoside phosphatase) family 64 465 IPR000407 GO:0016787(InterPro)
Sed03g2398 467 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 188 203 IPR000407 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2398 Sed-Chr3:20444103 Sed14g0784 Sed-Chr14:13732147 3.10E-117 dispersed
Sed07g2806 Sed-Chr7:42918079 Sed03g2398 Sed-Chr3:20444103 6.00E-145 transposed
Sed14g0693 Sed-Chr14:6890917 Sed03g2398 Sed-Chr3:20444103 2.30E-227 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2398 K14641 - csv:101220305 775.393