Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g2399 | ATGATTTCCGACATCAAGGCTGCGATCGGCGATGCCGTGCTGACCTCGATGTGGGTTTTCTGTGCTTCGTCTCTTGGGGTTCTGACCTCTGTCCTCTACTCGGCGGCCGCCGTTCATGGCGTTCCGTTTCATCCCCTTCTCATCACTACCACTCTCGTCTTCCTTCTGGTTTTCGTTTTTAATATAATCGGCGCCGTTTTGGGTGGAGCTAGCTTTAATCCCACCGCCACTGCTGCTTTCTATGCCGCCGGCGTTGGCCCCACTTCTCTCTTCTCCATGGCTCTCCGTTTTCCTGCTCAGGCGGCTGGTGCGGCTGCTGGTGCCCTGGCGATCAAAGAGGTGATGCCCATTCGATACATGCACATGCTCGGTGGACCTTCCCTGAAAGTTGACATTCACACTGGAGCCACAGCTGAAGGAGTTTTGACCTTCATAATCACTTTTGCTGTTCTTCTAATTGTTCTCAGGGGTCCCTCCAGCCCTGTAATTAAGACATGGCTGCTGGCAATGGCCACGGTAGCTTTAATCGTTGCGGGTTCTAGTTACACGGGCCCTTCCATGAATCCTGCAAATGCGTTTGGATGGGCATATATGAACAACAGACACGATACGTGGGAGCAGTTGTACGTGTACTGGATCGCCCCCTTCATCGGAGCCATTTTGGCTGCTTGGATTTTCCGATTCATCTTCCCACCTCCAGCCCCGGCCCCAGCCAAGCAGAAGAAAGCTTGA | 732 | 53.28 | MISDIKAAIGDAVLTSMWVFCASSLGVLTSVLYSAAAVHGVPFHPLLITTTLVFLLVFVFNIIGAVLGGASFNPTATAAFYAAGVGPTSLFSMALRFPAQAAGAAAGALAIKEVMPIRYMHMLGGPSLKVDIHTGATAEGVLTFIITFAVLLIVLRGPSSPVIKTWLLAMATVALIVAGSSYTGPSMNPANAFGWAYMNNRHDTWEQLYVYWIAPFIGAILAAWIFRFIFPPPAPAPAKQKKA | 243 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 20458362 | 20462716 | - | Sed0009629.1 | Sed03g2399 | 707886 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g2399 | 243 | PANTHER | AQUAPORIN SIP1-1 | 2 | 242 | IPR044222 | GO:0015250(InterPro) | |
Sed03g2399 | 243 | Pfam | Major intrinsic protein | 4 | 226 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed03g2399 | 243 | PRINTS | Major intrinsic protein family signature | 53 | 77 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed03g2399 | 243 | PRINTS | Major intrinsic protein family signature | 209 | 229 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed03g2399 | 243 | PRINTS | Major intrinsic protein family signature | 169 | 191 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed03g2399 | 243 | PRINTS | Major intrinsic protein family signature | 138 | 156 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed03g2399 | 243 | PRINTS | Major intrinsic protein family signature | 6 | 25 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed03g2399 | 243 | PRINTS | Major intrinsic protein family signature | 92 | 111 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed03g2399 | 243 | FunFam | Aquaporin SIP1-1 | 2 | 242 | - | - | |
Sed03g2399 | 243 | Gene3D | Glycerol uptake facilitator protein. | 3 | 238 | IPR023271 | - | |
Sed03g2399 | 243 | SUPERFAMILY | Aquaporin-like | 5 | 239 | IPR023271 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2399 | Sed-Chr3:20458362 | Sed05g2850 | Sed-Chr5:39649883 | 2.70E-11 | dispersed | |
Sed14g0694 | Sed-Chr14:6901518 | Sed03g2399 | Sed-Chr3:20458362 | 1.40E-70 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g2399 | K09875 | - | csv:101220534 | 395.586 |