Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2399 ATGATTTCCGACATCAAGGCTGCGATCGGCGATGCCGTGCTGACCTCGATGTGGGTTTTCTGTGCTTCGTCTCTTGGGGTTCTGACCTCTGTCCTCTACTCGGCGGCCGCCGTTCATGGCGTTCCGTTTCATCCCCTTCTCATCACTACCACTCTCGTCTTCCTTCTGGTTTTCGTTTTTAATATAATCGGCGCCGTTTTGGGTGGAGCTAGCTTTAATCCCACCGCCACTGCTGCTTTCTATGCCGCCGGCGTTGGCCCCACTTCTCTCTTCTCCATGGCTCTCCGTTTTCCTGCTCAGGCGGCTGGTGCGGCTGCTGGTGCCCTGGCGATCAAAGAGGTGATGCCCATTCGATACATGCACATGCTCGGTGGACCTTCCCTGAAAGTTGACATTCACACTGGAGCCACAGCTGAAGGAGTTTTGACCTTCATAATCACTTTTGCTGTTCTTCTAATTGTTCTCAGGGGTCCCTCCAGCCCTGTAATTAAGACATGGCTGCTGGCAATGGCCACGGTAGCTTTAATCGTTGCGGGTTCTAGTTACACGGGCCCTTCCATGAATCCTGCAAATGCGTTTGGATGGGCATATATGAACAACAGACACGATACGTGGGAGCAGTTGTACGTGTACTGGATCGCCCCCTTCATCGGAGCCATTTTGGCTGCTTGGATTTTCCGATTCATCTTCCCACCTCCAGCCCCGGCCCCAGCCAAGCAGAAGAAAGCTTGA 732 53.28 MISDIKAAIGDAVLTSMWVFCASSLGVLTSVLYSAAAVHGVPFHPLLITTTLVFLLVFVFNIIGAVLGGASFNPTATAAFYAAGVGPTSLFSMALRFPAQAAGAAAGALAIKEVMPIRYMHMLGGPSLKVDIHTGATAEGVLTFIITFAVLLIVLRGPSSPVIKTWLLAMATVALIVAGSSYTGPSMNPANAFGWAYMNNRHDTWEQLYVYWIAPFIGAILAAWIFRFIFPPPAPAPAKQKKA 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20458362 20462716 - Sed0009629.1 Sed03g2399 707886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2399 243 PANTHER AQUAPORIN SIP1-1 2 242 IPR044222 GO:0015250(InterPro)
Sed03g2399 243 Pfam Major intrinsic protein 4 226 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2399 243 PRINTS Major intrinsic protein family signature 53 77 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2399 243 PRINTS Major intrinsic protein family signature 209 229 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2399 243 PRINTS Major intrinsic protein family signature 169 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2399 243 PRINTS Major intrinsic protein family signature 138 156 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2399 243 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2399 243 PRINTS Major intrinsic protein family signature 92 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2399 243 FunFam Aquaporin SIP1-1 2 242 - -
Sed03g2399 243 Gene3D Glycerol uptake facilitator protein. 3 238 IPR023271 -
Sed03g2399 243 SUPERFAMILY Aquaporin-like 5 239 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2399 Sed-Chr3:20458362 Sed05g2850 Sed-Chr5:39649883 2.70E-11 dispersed
Sed14g0694 Sed-Chr14:6901518 Sed03g2399 Sed-Chr3:20458362 1.40E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2399 K09875 - csv:101220534 395.586