Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2400 ATGAACGACCTGATGACCAAATCCTTCACCAGCTATGTGGATCTGAAAAAGGCCGCCATGAAAGATGTCGACCTCGAAGCCGGTTTAGAAATGGCGAATTCGGCTACCGAAAACGGCGACATGGGGCTCTTCCTGGAGGAGGCCGAGAAGGTGAAATTGGAGATGGGTTCCATTAGAGAGATTCTGGAAAAGCTTCAGCAGGCCAATGAAGAGACGAGATCTGCTCATAAAATCGAAACTCTCAAGTCGCTTCGCCAGACGATCAATGTCGATATTGTTACTGTCCTGAAGAAGGCGCGGTCGATCCGATCCCAGCTCGAGGAAATGGACCGCACTAATGCTGCCAAGAAGAGGCTCTCTGGTAGCAAAGAGGGCACTGCCATTTACAGGACTCGAATGGCAGTGACAAATGGGCTGCGAAAGAAGCTAAAGGAGCTAATGATGGAGTTTCAGAGCCTAAGACAGAGGATGATGACAGAGTACAAAGAGACAGTGGGACGACGATACTTCACGGTGACGGGGGAGCAGCCGGAGGAGGAGGTGATAGAGAAGATAATATCGGATGGCGGGGAGGAGTATTTGGGGAGGGCAATACAGGAGCACGGGCGGGGAAAGGTGGCGGAGACGGTGGTGGAGATACAGGACCGGCACGGGGCAGCAAAGGAGATAGAGAGAAGCTTGCTAGAATTGCACCAAGTGTTTTTGGACATGGCTGTGATGGTGGAAGCACAAGGGGAGAAAATGGATGACATTGAACACCATGTGATCAATGCTTCACAATATGTAAGAGATGGGACCAAGGATTTGAAAACTGCTAAGGATTTGCAAAGGAATGGTAGGAAATGGATGTGTTTGGGGATTGTGCTTTTGTTGCTCATTATTTTAGTTGTTGTTATTCCAATTGTTGTTAGTTTTGGGAGTTCTTGA 927 48.76 MNDLMTKSFTSYVDLKKAAMKDVDLEAGLEMANSATENGDMGLFLEEAEKVKLEMGSIREILEKLQQANEETRSAHKIETLKSLRQTINVDIVTVLKKARSIRSQLEEMDRTNAAKKRLSGSKEGTAIYRTRMAVTNGLRKKLKELMMEFQSLRQRMMTEYKETVGRRYFTVTGEQPEEEVIEKIISDGGEEYLGRAIQEHGRGKVAETVVEIQDRHGAAKEIERSLLELHQVFLDMAVMVEAQGEKMDDIEHHVINASQYVRDGTKDLKTAKDLQRNGRKWMCLGIVLLLLIILVVVIPIVVSFGSS 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20471050 20472748 + Sed0024192.1 Sed03g2400 707887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2400 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 272 IPR000727 -
Sed03g2400 308 FunFam Syntaxin 132 203 303 - -
Sed03g2400 308 SUPERFAMILY t-snare proteins 40 265 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed03g2400 308 CDD SNARE_syntaxin1-like 209 271 - -
Sed03g2400 308 CDD SynN 41 197 IPR006011 GO:0016020(InterPro)
Sed03g2400 308 Gene3D - 205 305 - -
Sed03g2400 308 Pfam SNARE domain 247 298 IPR000727 -
Sed03g2400 308 ProSitePatterns Syntaxin / epimorphin family signature. 216 256 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Sed03g2400 308 SMART SynN_4 36 162 IPR006011 GO:0016020(InterPro)
Sed03g2400 308 Pfam Syntaxin 44 245 IPR006011 GO:0016020(InterPro)
Sed03g2400 308 Gene3D - 41 168 - -
Sed03g2400 308 Coils Coil 48 68 - -
Sed03g2400 308 PANTHER SYNTAXIN 47 293 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed03g2400 308 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 38 168 - -
Sed03g2400 308 SMART tSNARE_6 205 272 IPR000727 -
Sed03g2400 308 Coils Coil 136 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2400 Sed-Chr3:20471050 Sed08g2301 Sed-Chr8:36458517 5.50E-70 dispersed
Sed14g0695 Sed-Chr14:6907447 Sed03g2400 Sed-Chr3:20471050 5.10E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2400 K08486 - csv:101220775 501.516