Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2419 ATGAGGCTTCAATCCCTTTTTGCAGCTGCATCTTTACTCTTACTTATATACACTCTCTCCTTCTCTGCTGCTGATCTGAACTCAGACAAGCAAGCTCTTCTCGATTTTATTTCGACAGTTCCCCATGGTCGAAGAATCAACTGGAATTCTTCTACCCCGGTCTGCACTACTTGGGTTGGCATCACTTGCAATTCAGAACTCTCAAATGTGCTTGCTCTCAGGCTGCCTGCCATTGGACTGCACGGTCCGATCCCTGCCAATACACTTGGAAAGCTAGAAGCTCTTAGAACTTTGAGTCTTCGATCTAATAATCTTAATGGAAACCTTCCATCAGATGTCCTATCTCTTCCCTCCCTAAAGTTTCTATATCTTCAACACAATAACTTTTCTGGCAAAATTCCTTCTTCCCTGTCACCTAGCCTTACCTTCCTTGATCTGTCCTTCAACTCTCTCACTGGGAGCATTCCGACATCGATACAAAATTTAACGCACCTCACTAGCCTCAACCTTCAAAACAATTCCCTGTCCGGATCCATTCCTGATATAGGTCACCTAAATCTTAAGCAATTGAACTTGAGCTACAACCATCTGGGTGGTCCCATTCCTGCTTCTCTGCAATCATTTCCTCCTTCTACCTTTGAAGGAAACTTACTGCTATGTGGCTCCCCTCTGAAAAATTGCTCCCTTGCTGGTGCATCCCCCTTACCCTCTCCTTCTCCTTCTGATTCAATCGCACCAAAGAAAAAGAGCGAAAAGAGAATAAATATTGGAGTAATCGTTGCCATTGCATTAGGTGGTTCTGCAGTGCTCTTCCTCCTGGTGATAATGATTATTGTCTGCTGTATGAAGAAAAAAGATGGTGAAGGTAGTACTGCTGCAGTGAAAGGAAAGGGTAAAAGGAGCGAGCAACCGAAGGAGGATTTCGGAAGTGGTGTGCAAGAGCCAGAGAAAAACAAGCTTGTTTTCTTTGAAGGATGTGCTTTTAATTTTGATCTCGAGGACTTGTTAAGGGCCTCAGCCGAAGTGCTCGGGAAAGGGAGTTATGGAACTACTTACAAGGCAATCTTGGACGAAGGGATAACAGTGGTAGTTAAGAGGTTGAAAGAAGTTGTAGCAGGAAAAAAGGAATTTGATCAACAAATGGAGATTGTTGGGAGGATGGGCCAGCATCCAAACGTCGTGCCTCTCCGTGCCTATTACTATTCAAAGGACGAAAAACTTTTAGTTTATGACCATGCCGTTGCTGGAAGCTTTTCGGCATTGCTCCGCGGAAGTCGAGAAGCCGGACAAGCACCACCGGATTGGGAAACAAGAGTGAAGGTTGCATTGGGGAGTGCGAAAGGCCTTGCACATATCCATTCAGCGAGCGGGGGAAGGTTCATCCATGGAAACATAAAGTCCTCTAACATCCTTCTCACACAAGACCTGAATGGTTGTATTTCAGATTTTGGCCTGACTCCATTGATGAACTCTCCTGCCATTCCCTCTAGAAGTGCAGGATATCGGGCTCCAGAGGTGATTGAGTCTCGGAAATCAACTCAAAAGTCTGACGTTTACAGTTTTGGAGTTGTTTTGCTTGAGATGTTGACTGGGAAATCACCATCCCAATCTCCAGGCCGTGACGACGTAATGGACCTTCCGAGATGGGTCCAATCTGTGGTAAGAGAGGAATGGACATCAGAGGTGTTTGATGTAGAGCTAATGAAGTACCAGAACATTGAAGAAGAGTTGGTTCAAATGCTTCAAATAGCAATGGCATGCGTGTCTCGAATGCCCGACATGAGGCCAACAATGGAGGAAGTCGTAAGGATGATTGAGGACATCCGATCATCTGACTCGGGAGCTCGACCATCATCAGAAGATAACAAATACGGGGACGGGGATGGGGACAATGACTTGGATTCTCAGACCCTGTAA 1917 45.49 MRLQSLFAAASLLLLIYTLSFSAADLNSDKQALLDFISTVPHGRRINWNSSTPVCTTWVGITCNSELSNVLALRLPAIGLHGPIPANTLGKLEALRTLSLRSNNLNGNLPSDVLSLPSLKFLYLQHNNFSGKIPSSLSPSLTFLDLSFNSLTGSIPTSIQNLTHLTSLNLQNNSLSGSIPDIGHLNLKQLNLSYNHLGGPIPASLQSFPPSTFEGNLLLCGSPLKNCSLAGASPLPSPSPSDSIAPKKKSEKRINIGVIVAIALGGSAVLFLLVIMIIVCCMKKKDGEGSTAAVKGKGKRSEQPKEDFGSGVQEPEKNKLVFFEGCAFNFDLEDLLRASAEVLGKGSYGTTYKAILDEGITVVVKRLKEVVAGKKEFDQQMEIVGRMGQHPNVVPLRAYYYSKDEKLLVYDHAVAGSFSALLRGSREAGQAPPDWETRVKVALGSAKGLAHIHSASGGRFIHGNIKSSNILLTQDLNGCISDFGLTPLMNSPAIPSRSAGYRAPEVIESRKSTQKSDVYSFGVVLLEMLTGKSPSQSPGRDDVMDLPRWVQSVVREEWTSEVFDVELMKYQNIEEELVQMLQIAMACVSRMPDMRPTMEEVVRMIEDIRSSDSGARPSSEDNKYGDGDGDNDLDSQTL 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21039174 21042729 + Sed0017222.5 Sed03g2419 707906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2419 638 Gene3D Transferase(Phosphotransferase) domain 1 415 627 - -
Sed03g2419 638 FunFam Nuclear pore complex protein NUP107 26 181 - -
Sed03g2419 638 CDD STKc_IRAK 343 608 - -
Sed03g2419 638 FunFam pollen receptor-like kinase 1 305 412 - -
Sed03g2419 638 ProSitePatterns Protein kinases ATP-binding region signature. 343 374 IPR017441 GO:0005524(InterPro)
Sed03g2419 638 Gene3D Ribonuclease Inhibitor 140 229 IPR032675 -
Sed03g2419 638 Pfam Protein kinase domain 341 603 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2419 638 Gene3D Ribonuclease Inhibitor 28 139 IPR032675 -
Sed03g2419 638 ProSiteProfiles Protein kinase domain profile. 337 608 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2419 638 Pfam Leucine Rich Repeat 164 181 IPR001611 GO:0005515(InterPro)
Sed03g2419 638 Pfam Leucine Rich Repeat 95 114 IPR001611 GO:0005515(InterPro)
Sed03g2419 638 Pfam Leucine Rich Repeat 118 138 IPR001611 GO:0005515(InterPro)
Sed03g2419 638 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515(InterPro)
Sed03g2419 638 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Sed03g2419 638 PANTHER OS05G0588300 PROTEIN 12 617 IPR050994 -
Sed03g2419 638 MobiDBLite consensus disorder prediction 607 638 - -
Sed03g2419 638 SUPERFAMILY Protein kinase-like (PK-like) 341 605 IPR011009 -
Sed03g2419 638 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Sed03g2419 638 MobiDBLite consensus disorder prediction 607 630 - -
Sed03g2419 638 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515(InterPro)
Sed03g2419 638 MobiDBLite consensus disorder prediction 288 312 - -
Sed03g2419 638 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 413 619 - -
Sed03g2419 638 Gene3D Phosphorylase Kinase; domain 1 289 412 - -
Sed03g2419 638 SUPERFAMILY L domain-like 39 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2419 Sed-Chr3:21039174 Sed03g2421 Sed-Chr3:21039531 2.00E-276 dispersed
Sed03g2418 Sed-Chr3:21038254 Sed03g2419 Sed-Chr3:21039174 2.00E-276 tandem
Sed03g2419 Sed-Chr3:21039174 Sed03g2420 Sed-Chr3:21039531 2.00E-276 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78929 PF00069 Pkinase 3.30E-37 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2419 - - - 0.0