Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2427 ATGATGCCGATCCTGAACCTCCATCTTGTACTTACCTTGTTCTTCCATATCCCCATAATTTCATCACAGAATCCCATCCTCCTCAACTGCGGAGCTTCCTCGACGGCTATCGACATTGATCACCGGAAATGGACGACCGACGACAAATCCAAGTACATCCCGGCGACGGGGGACAGCACTACCTCGCCGGCGGCCACGCAGGATCCATCCGTTCCTGAAATCCCTTTCATGACGGCCAGAGTTTTCAACTCTAATTTCACTTATACATTTCCTATGCCTCCAACTCGTTTGTTTCTTCGCCTCTACTTCTACCCATCGTCCTATGCTGGACTTGATGCCTTCAATGCCCGTTTCTCTGTTTTAACTCAAACGCACACTCTCCTTCACAACTTCAGCGCTTCATTAACCACTGAGGCTTTGAACTTTGATTACATTGTTAAGGAATACTCTGTTTATGTTCAAGATGGAATGTTGAATCTGACTTTCCTTCCGTCTTCTATCCATCCCAAGGCCTATGCGTTTGTGAATGGGATTGAGATTGTATCTATGCCTGATATTTACTCCTCCGGGTCTACTTTTGTTGTTGGGCAGTCCACGCCTTTTACTGTCGATAACGGTACCGCGCTTGAGAATGTTTATCGGTTGAATGTCGGAGGGAATGGAATTTCGCCTTTGGCGGATTCGGGGTTGTTTAGGTCTTGGTTTGATGACTCTCTGTATTTGTTTGGTGCTGCACAGGGAGTGAGTGTGAGTCTTGATCGGGACTCGTCCATTACTTATCCGCCGGATGTTTCTGCTTACGTTGCGCCCGTGGAAGTTTACTCCACGGCTAGAACCATGGGTCCGGATGACCATGTGAATCTGAATTATAATTTGTCCTGGGTTTTCTCTGTTGATTCTGGATTCTTTTACCTTGTTAGGCTTCATTTTTGTGAGATTGTTGCAACTATCACCAAGGTTAACCAAAGAGTTTTTGACATTTTTATCCATAATCAAACTGTTATGCATAGTGCTGATGTTGTTGCTTGGGCTCATGGAAATATTATGACTCCTGTGTACAAGGATTATGTGGTTATGGTTCCAGGGGGTGGAAGCCCACAGAAGGATTTATGGCTCGAACTGCATCCAGACGAGTCGGCGATGCCCAATTTCGATGATGCGATCTTGAACGGAGTGGAGATATTCAAAATCAACAGCTCGAATGGTAATCTTGCAGGGCTGAATCCTATTCCTGCGCCGATAGAGAAGATAATTGATCCATCGTTAGCTAAGTCGCCGTCGTCTCATGGTAAATCAAAGAATAATGCAGCAGTTATTGCAGGAGTTGTTTGTGGTGTAGTTGTTTTAGCTCTTCTTACTGGTTTCTTTGTTGTTGCTAAATGTTGCGGTCGTCGTGGGCGTGGGAAGGATTCGAGTACTGTTGAAGGACCATCAGGATGGCTCCCTCTTTCTCTGTATGGAAATTCCCATTCGGCTGAATCGGCTAAGACGAACACAAGTCGAAGCTATATATCCTCCATGCCTTCCAACCTTTGCCGCCACTTCTCATTTATTGAGATAAAGGCTGCCACAAGGGACTTTGATGAATCTTTAGTACTTGGAGTGGGTGGTTTTGGCGAGGTTTACCGGGGAAAAATTGATGGTGGGACCTTAGAAGTTGCGATCAAGCGTGGGAACCCTCTTTCCGAGCAGGGTGCGCATGAGTTTCAAACTGAGATCGAAATGCTTTCTAAGCTTCGCCATCGCCACCTTGTTTCGTTGATTGGCTACTGCGATGAGAATTGTGAAATGATACTGGTTTATGATTACATGGCTCATGGAACGCTTAGAGAGCATCTATACAAGACCCACATGCCACCTTTGTCTTGGAGGCAAAGGCTCGAGATTTGCATCGGAGCTGCTCGTGGTCTGCATTATCTTCACACGGGTGCCAAGCATACAATTATTCACCGAGATGTGAAGACAACCAATATCCTTTTGGATGATAAGTGGGTGGCAAAAGTATCCGATTTCGGGTTGTCGAAAATTGGTCCTACATTGGATCACACACATGTTAGCACTGTAGTAAAAGGTAGTTTTGGATACTTGGATCCTGAATACTTTATGCGGCAGCAATTGACCGAAAAATCTGATGTTTACTCCTTTGGAGTCGTCCTCTTCGAAGTCCTATGTGCTCGACCAGCCCTGAGCCCAAAACTCTCTAAAGAGAAAGTGAGTTTAGCAGAATGGGCTGCTCACTGCTACAAAAAAGACATTTTACATCAGATAATTGACACATTCCTAAAAGGGAAGATTGCATCCGAGTGTTTTAAGAAGTTCACAGAGACGGCAATGAAATGTGTATCTGATAAGGGCATCGACAGGCCGTCAATGAGCGATGTTCTCTGGAATCTAGAGTTTGCATTGCAGCTACAGGAGAGCGCAGAAGAAAGCGGCAAGCTAGGCAGCGGGATGGAGGAGGAAGAAGGTCGGCATCAGCTCGACGTCATTAGCAAAGGGAAGAAGGATGCGGGTGCTTCCCCTAGCATCGACGCAAACATAATGGACTCGAGAAGCACCGGAATCAGTATGAGCATTGGAAGTCGAAGCCTCGCTAGTGAAAATTCAGGCGGGTTGACGACAAGTAGTGTCTTTTCACAGATCATGAACCCAGAAGGTCGATAA 2664 45.87 MMPILNLHLVLTLFFHIPIISSQNPILLNCGASSTAIDIDHRKWTTDDKSKYIPATGDSTTSPAATQDPSVPEIPFMTARVFNSNFTYTFPMPPTRLFLRLYFYPSSYAGLDAFNARFSVLTQTHTLLHNFSASLTTEALNFDYIVKEYSVYVQDGMLNLTFLPSSIHPKAYAFVNGIEIVSMPDIYSSGSTFVVGQSTPFTVDNGTALENVYRLNVGGNGISPLADSGLFRSWFDDSLYLFGAAQGVSVSLDRDSSITYPPDVSAYVAPVEVYSTARTMGPDDHVNLNYNLSWVFSVDSGFFYLVRLHFCEIVATITKVNQRVFDIFIHNQTVMHSADVVAWAHGNIMTPVYKDYVVMVPGGGSPQKDLWLELHPDESAMPNFDDAILNGVEIFKINSSNGNLAGLNPIPAPIEKIIDPSLAKSPSSHGKSKNNAAVIAGVVCGVVVLALLTGFFVVAKCCGRRGRGKDSSTVEGPSGWLPLSLYGNSHSAESAKTNTSRSYISSMPSNLCRHFSFIEIKAATRDFDESLVLGVGGFGEVYRGKIDGGTLEVAIKRGNPLSEQGAHEFQTEIEMLSKLRHRHLVSLIGYCDENCEMILVYDYMAHGTLREHLYKTHMPPLSWRQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDDKWVAKVSDFGLSKIGPTLDHTHVSTVVKGSFGYLDPEYFMRQQLTEKSDVYSFGVVLFEVLCARPALSPKLSKEKVSLAEWAAHCYKKDILHQIIDTFLKGKIASECFKKFTETAMKCVSDKGIDRPSMSDVLWNLEFALQLQESAEESGKLGSGMEEEEGRHQLDVISKGKKDAGASPSIDANIMDSRSTGISMSIGSRSLASENSGGLTTSSVFSQIMNPEGR 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21120758 21123574 - Sed0020985.1 Sed03g2427 707914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2427 887 Gene3D Transferase(Phosphotransferase) domain 1 604 818 - -
Sed03g2427 887 ProSitePatterns Protein kinases ATP-binding region signature. 533 556 IPR017441 GO:0005524(InterPro)
Sed03g2427 887 Gene3D Phosphorylase Kinase; domain 1 487 603 - -
Sed03g2427 887 PANTHER OS03G0124300 PROTEIN-RELATED 7 461 IPR045272 GO:0004714(InterPro)|GO:0006468(InterPro)
Sed03g2427 887 MobiDBLite consensus disorder prediction 858 887 - -
Sed03g2427 887 Pfam Malectin-like domain 28 397 IPR024788 -
Sed03g2427 887 Pfam Protein tyrosine and serine/threonine kinase 532 796 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2427 887 Gene3D - 208 399 - -
Sed03g2427 887 Gene3D - 22 183 - -
Sed03g2427 887 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2427 887 ProSiteProfiles Protein kinase domain profile. 527 801 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2427 887 SMART serkin_6 527 801 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2427 887 CDD STKc_IRAK 533 799 - -
Sed03g2427 887 FunFam Receptor-like protein kinase FERONIA 604 814 - -
Sed03g2427 887 SUPERFAMILY Protein kinase-like (PK-like) 498 800 IPR011009 -
Sed03g2427 887 FunFam FERONIA receptor-like kinase 25 184 - -
Sed03g2427 887 FunFam FERONIA receptor-like kinase 207 398 - -
Sed03g2427 887 FunFam Receptor-like protein kinase FERONIA 499 603 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2427 Sed-Chr3:21120758 Sed11g0218 Sed-Chr11:1995323 1.90E-216 dispersed
Sed14g0568 Sed-Chr14:5681470 Sed03g2427 Sed-Chr3:21120758 0.00E+00 wgd
Sed14g0720 Sed-Chr14:7423827 Sed03g2427 Sed-Chr3:21120758 1.70E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78933 PF12819 Malectin_like 1.00E-36 CL0202 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2427 - - - 0.0