Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2428 ATGGCGGTTTCTCCTAATTCTTTCCCACCGAGGAAGCGGCGGCCGTCGGCGGCGGCTTTCGTTCCTCCAAAATTCTCCGGCCAAGTCCTCCTCGAATCCCTCGTCTCTCTCTGCCGAGAAATCTCCGCTACCAAACCGCTCCAATTCCTCCTCAACCGCTACTCCAACTCCACGATTCGCAAATTTCAACTCCTGGAGGTTTTTCTCGAAGATCTCCGGTGCAATACGATCGTTTCGATCTCCTCCGCCGCGCTCTGTCTCGAAGAAATGTACATCGTGTTGCAGAGAATGAAGACCTTGATCGAAGACTGTTCCAACGGAAGCAAGATGTGGCTACTCACACAGAACGAATCAATCGCCAACAGTTTTCACGAACTTACCTTGGATTTATCCACTCTTCTAGATATCTTCCCCGTCAACGACGCTCGATTGACCGAAGACGTCGAGGAATTGTTCTACCTCTTGAGAAATCAGTGCTCCGAATCCGCCGCCTTCGTCGATCCCAGAGATCAGGATCTCCGATTCAGAGTTTTGAACTTGATCGATCAGATTCGAGATGAAATCGTTCCGGATCACACCGAATTGGCCGAGATTTTCTCGAGGATTGATATTCGAGATTCGTCCAGTTGCAGAGAGGAAATCGAGAATCTCGAGGATGAAATACACAATCAAACGGATGAGAAATCGAGATCTGATGTGATTGCGTTCATCGGATTAGTTCGTTACGCGAAGTGCGTGCTATACGGAGATTCAATCGCCTCGCCGGAATTTCAACGGAAAGATTCCATCTCCGATTTGCCTTTGCCGGCGGATTTCAAATGCCCGATTAGTCTCGAATTAATGCAGGACCCTGTCGTCGTGGCAACAGGACATACGTACGATCGTTCCGCGATCACGCTCTGGATTGAATCTGGCCACAACACGTGTCCCAAGACAGGTCAGACCCTGGCCCACACCAACCTAATTTCTAACCGCGCATTGAAAAACCTAATAGCTATGTGGTGTCGTCAGGAGCGGATTCCGTTCGCCGTAACGGAAACGAACCTAGACGTTCTGTTAAACAAGGCGGCATTGGAAGCCATGAGGATGACGGCGTCGTTTCTCGTTAACAAACTCGCCACGTCAGCGAATTCCTTACACGATACAAACGGCGTCGTTTATGAGCTTCGGGTTTTGGCGAAAACAGATTCCGGCAGCCGTGGGTTTATAGCGGTGGCCGGAGCTCTGCCGCTGCTCGTCCGCTATCTCAACTCCGACGACAAGGCGCTGCAGGTTAACGCCGTGACGACGGTGCTGAACCTTTCGATTTTGGAAGCGAACAAGTCGTTGATTATGGAGACGGACGGCGCGTTGATCGGAGTGATTGAGGTGCTCCGATCCGGCGCCACGTGGGAGGCGAAAGGGAACGCCGCTGCCACGATCTTCAGTCTCGCCGGCGTCCATAGTTTCCGGCGGAGATTGGGGAGGAAGACGCGTGTCGTAAGGGGATTGCTGGATCTGGCGAAAGAGGGGCCGATTAGTTCGAAGAGGGACGCTCTGGTGGCGATTCTGACATTGGCCGGCGATCGGGACACGGTGGGGAGGTTAATCGAAGGTGGGGTTATGGAGACGGTGAGCCATGTGATGAACAGTCTTCCGGAAGAGGCGGTGACGATTCTAGAAGTGGTGGTGAGGAAAGGGGGATTTATGGCGGTTGCTTCTGGATTTTATGTGATTAAGAAATTGGGGGCGGTTTTGAGAGAGGGATCTGATCGGGCTAGAGAGAGCGCGGCGGCGGCGCTGGTGACGATTTGCCGGCAAGGTGGGTCAGAGACGGTGGCGGAGCTGGCGTCGATTACCGGGATTGAGAGAGTAGTTTGGGAGATGATGGGCGGTGGGACGATGAGGGGGCGGCGGAAGGCGGCGTCGCTGTTGAGAATACTCCGGCGATGGGCGGCGGGGTTGGACGAGAATGGTGGCGTCGACGGTGGAGACTCCATGATGGTGACTTCGTCAAGAACAGTTGGCGATTCCACCACCATTGTTAGTTCATCGAGAGCTGCAATTGTTAATATTTAG 2058 53.21 MAVSPNSFPPRKRRPSAAAFVPPKFSGQVLLESLVSLCREISATKPLQFLLNRYSNSTIRKFQLLEVFLEDLRCNTIVSISSAALCLEEMYIVLQRMKTLIEDCSNGSKMWLLTQNESIANSFHELTLDLSTLLDIFPVNDARLTEDVEELFYLLRNQCSESAAFVDPRDQDLRFRVLNLIDQIRDEIVPDHTELAEIFSRIDIRDSSSCREEIENLEDEIHNQTDEKSRSDVIAFIGLVRYAKCVLYGDSIASPEFQRKDSISDLPLPADFKCPISLELMQDPVVVATGHTYDRSAITLWIESGHNTCPKTGQTLAHTNLISNRALKNLIAMWCRQERIPFAVTETNLDVLLNKAALEAMRMTASFLVNKLATSANSLHDTNGVVYELRVLAKTDSGSRGFIAVAGALPLLVRYLNSDDKALQVNAVTTVLNLSILEANKSLIMETDGALIGVIEVLRSGATWEAKGNAAATIFSLAGVHSFRRRLGRKTRVVRGLLDLAKEGPISSKRDALVAILTLAGDRDTVGRLIEGGVMETVSHVMNSLPEEAVTILEVVVRKGGFMAVASGFYVIKKLGAVLREGSDRARESAAAALVTICRQGGSETVAELASITGIERVVWEMMGGGTMRGRRKAASLLRILRRWAAGLDENGGVDGGDSMMVTSSRTVGDSTTIVSSSRAAIVNI 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21156256 21159092 + Sed0009941.1 Sed03g2428 707915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2428 685 FunFam RING-type E3 ubiquitin transferase 268 339 - -
Sed03g2428 685 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 343 IPR013083 -
Sed03g2428 685 Coils Coil 207 227 - -
Sed03g2428 685 PANTHER U BOX DOMAIN-CONTAINING 52 645 - -
Sed03g2428 685 CDD RING-Ubox_PUB 269 321 IPR045210 -
Sed03g2428 685 SMART Ubox_2 271 334 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed03g2428 685 SUPERFAMILY RING/U-box 258 340 - -
Sed03g2428 685 Gene3D - 368 644 IPR011989 -
Sed03g2428 685 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 407 449 IPR000225 GO:0005515(InterPro)
Sed03g2428 685 Pfam U-box domain 269 339 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed03g2428 685 SUPERFAMILY ARM repeat 383 641 IPR016024 -
Sed03g2428 685 ProSiteProfiles U-box domain profile. 267 341 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed03g2428 685 Pfam Armadillo/beta-catenin-like repeat 402 435 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2174 Sed-Chr1:16404571 Sed03g2428 Sed-Chr3:21156256 1.70E-101 dispersed
Sed03g2428 Sed-Chr3:21156256 Sed14g0585 Sed-Chr14:5876462 1.20E-287 dispersed
Sed03g2428 Sed-Chr3:21156256 Sed08g2733 Sed-Chr8:39121108 1.60E-114 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2428 - - - 0.0