Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g2443 | ATGACTCCTGGTCATCCATTGTTGGGTTCATCAAAAACTGCATCAGTTACTGAATACAGATCCCCGTCTGGAAATCTTGGTTCTGCTGGTTTTCTATGTCGCAGTGCTTCCTTCACCTCTTCCAGTTGCGATGATGCTCAGAGTGACATTGTTGATGTGAAGGAAAACTGTGACAGCTCTTTCGGAAATAAAGGTTGGAACTGTGAGAATTCCCTCAGACGTTCCGCTTCTCTTTCTAGGAGGAGGCAGTATTATACTCTTGGCTCTCTGTTTCCTCAGCAAAAAACTTTGGGCTACCCCACCCAAGATCAAAGACGCCTGGTTTCGTGGGGTGTAATGGAGCTACGTAATATTAATGATGAAACTGCAAGTTTTGAACTTGCTAGGGTCCAGGAGAAGTTGCACAAGGCTCAAAGAAGTCGCCATAAGAGTATGCAGTTTGACGATAATTTACAGCATGAAGATAATCCAAGGTTGATATACATCAACGATCCGAGGAGAACTAATGACAAGTATGAGTTCACAGGAAATGAGATAACCACTAGCAAGTACACATTGATTACCTTCTTGCCAAAGAACCTCTTTATTCAGTTTCACCGTGTTGCCTATCTTTATTTTCTTGCTATTGCAGCTCTTAACCAGCTTCCGCCCTTGGCAGTCTTTGGGAGAACAGTATCTCTTTTCCCCCTCCTGTTTGTGCTTTGTGTTACAGCTATCAAAGATGGCTACGAGGATTGGCGAAGACACAGATCAGATCGCAATGAGAACAATAAACAGTCTCTGGTGCTTCAATCTGATGAATTCCAATTGAAAGTGTGGAAAAAGATACGAGTTGGTGAAGTCCTTAAGATTTGTGCCGATGAGGTCATTCCTTGTGATATGGTTTTATTGGGGACAAGTGATCCTAGTGGTCTTGCTTACATCCAAACAATGAATTTGGATGGTGAGTCAAACTTGAAGACAAGGTATGCTAGGCAGGAAACAGCATCAGCAGTAACTGAGGGGTGTTCGTATTCAGGTCTTATTCGATGTGAACAACCTAATAGGAACATTTATGAGTTCACTGCCAATATGGATTTCAATGGCCATAGGTTTCCCCTTAGCCAGTCAAACATAGTCTTGCGTGGTTGTCAGCTGAAGAACACTGAATGGATTATTGGGGTGGCTGTCTATGCTGGACAAGAAACAAAAGCCATGTTAAATAGTGCAGTGTCTCCTGCAAAGCGAAGTAAACTGGAGGGTTACATGAACAGGGAAACCTTGTGGTTGTCTATTTTCCTCTTTATCATGTGTCTAGTTGTGGCTCTTGGAATGGGCAAATGGCTTGCTCGCCACAAGGACCGGCTTGATACCTTGCCATATTATAGGAGAAGGTACTTCACAAATGGGGCAGACAATGGTAAGAAGTACAGGTTTTATGGAATACCTATGGAGACGTTTTTCTCCTTTTTGAGTTCTGTTATAGTGTTTCAGATAATGATACCGATATCCCTTTATATTACTATGGAGATGGTGAGACTGGGCCAGTCATATTTCATGATTGAAGATAAGCATATGTACTGCAGAAGCTCTTGCTCAAGGTTCCAGTGTAGATCGTTGAATATTAATGAAGATCTTGGTCAAGTTCGGTACATATTTTCTGATAAAACGGGAACACTTACTGAAAATAAAATGGAATTCAAAAGAGCTAGTGTGCATGGTAAGAATTACGGGAACAACTTCTCTGACGGATATCCATCAATGTTGTATTCCATTCCAGCAGCTTTAGGGAGGAGGAGGTGGAAACTTAAATCTGACGTTGCTGTTGATACTGAACTTTTCAAATTATTGCACAAGGACCTAAACGGTGATGAAAAGATTGCTGCACATGAATTTTTTCTTACTTTGGCTGCATGCAATACTGTAATTCCTATTCTCATGGATGACAAATCTAGTTATGCGAATGGTGATTTGCACGAGGATTTTGAAACTATCGACTATCAGGGCGAATCCCCTGACGAGCAAGCACTAGTTGCTGCAGCCAATGCTTATGGATATACCCTTTTTGAGCGCACGTCCGGGCACATTGTTATAGATGTCAATGGTGAGAACTTAAGATTGGATGTTTTGGGTTTACATGAGTTTGATAGTGTTCGCAAGAGAATGTCTGTTGTCATCAGATTCCCTGACAACACTATAAAGGTTTTGGTGAAAGGTGCTGATAATTCAATGTTGAGTATTTTACATAATGACTTGGGTAGGGAAGAATTTATCCAGCATACTACTCAAAGCCATTTGTATGAATATTCAATGGAAGGCTTGCGAACACTTGTAGTTGCTGCCAAAGATGTGACAGAGTCTGAATTTGAGCTGTGGCAGAGCAGATATGAGGATGCCAGTACTTCACTAACTGATAGAGCCGTAAAACTGCGTCAGACAGCAGCCCTTATAGAATGTGATCTTAAGCTTTTGGGAGCAACTGCTATTGAGGACAAGCTTCAAGATGGTGTACCTGAAGCCATTGAGTCTCTTCGACAGGCGGGAATAAAGGTGTGGATTCTGACGGGAGATAAGCAGGAGACGGCCATATCAATTGGTCTCTCCTGCAAACTGCTGACTTCAGACATGCAGTCAATTATTATCAATGGAAACTCCGAGAACGATTGCAGGGAACTTTTAAGTGATGCTATAGCCAAATTTGTTACACGATCAACACAGGACGGAAGTCAAAGACAGAAGCTGAAGAATTGTGAGAATGACTGCCATGATATACCGAAGACATCTAGCATGCTGGAGTTTAGTGAAGAAGAAGAAGAAGTGGCTGATAAACCGCTAGCTCTAATAATTGATGGAAACAGTTTGGTGTACATTTTGGAGAAGGAATTGGAGTCAGAGCTTTTTGACCTTGCAACTTCATGCAATGTTGTGCTATGTTGTCGTGTTGCACCTCTGCAGAAAGCTGGAATTGTTGATTTGATCAAGAGTAGAACTAATGATATGACATTGGCAATTGGAGATGGGGCCAATGATGTCTCAATGATTCAGATGGCCGATGTAGGCGTTGGTATATGTGGTCAGGAAGGGCGTCAAGCAGTAATGGCATCTGATTTTGCCATGGGACAATTTCGGTTTTTGAAAAGATTACTTCTAGTGCATGGACATTGGAACTATCAACGCGTAGGCTACATGGTTCTTTACAATTTTTACCGCAATGCTGTTTTTGTCTTGATGCTCTTCTGGTACATTCTATGCACAGCATTCTCAACAACTTCAGCTCTGACTGATTGGAGCAGTGTGCTTTACTCTGTTATTTACACGTCCATCCCTACTATTTTCGTTGGTATTCTGGATAAAGGTTTGAGTGATAAAACCCTTCTAAAATATCCTAAGCTCTATGGTGCTGGCTATAGACAGGAGGCATACAATTTGCGTCTCTTTTGGTTGACGATGATCGATACCCTGTGGCAGAGTCTTGTTCTCTTCTATGTGCCATTATACATTTATAAGGACAGTTCCATTGATATATGGAGCTTGGGAAGTTTGTGGACTATAGCGGTTGTTATCCTTGTAAATGTACATTTGGCGATGGATGTTCAACGCTGGGTATACATTACACATGCTGCAGTTTGGGGATCCATTATTATATCATATGCCTGCATGGTGGTGTTGGATTCGATACCCGTTTTTCCAAATTATTGGACGATCTTTCATCTGGCGAAGTCCCCGACGTATTGGTTGACTATATTGCTCATAATAGTTGTTGCATTGCTTCCGCGGTATCTTTTTAAAGTTGTGCACCAAAGATTTTGGCCATCAGATATTCAGATAGCCAGGGAAGCCGAGGTACTGAGAAAACGAAATGGTCGCGAGCACTTGAGTTTAAAGTGA | 3867 | 41.79 | MTPGHPLLGSSKTASVTEYRSPSGNLGSAGFLCRSASFTSSSCDDAQSDIVDVKENCDSSFGNKGWNCENSLRRSASLSRRRQYYTLGSLFPQQKTLGYPTQDQRRLVSWGVMELRNINDETASFELARVQEKLHKAQRSRHKSMQFDDNLQHEDNPRLIYINDPRRTNDKYEFTGNEITTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNKQSLVLQSDEFQLKVWKKIRVGEVLKICADEVIPCDMVLLGTSDPSGLAYIQTMNLDGESNLKTRYARQETASAVTEGCSYSGLIRCEQPNRNIYEFTANMDFNGHRFPLSQSNIVLRGCQLKNTEWIIGVAVYAGQETKAMLNSAVSPAKRSKLEGYMNRETLWLSIFLFIMCLVVALGMGKWLARHKDRLDTLPYYRRRYFTNGADNGKKYRFYGIPMETFFSFLSSVIVFQIMIPISLYITMEMVRLGQSYFMIEDKHMYCRSSCSRFQCRSLNINEDLGQVRYIFSDKTGTLTENKMEFKRASVHGKNYGNNFSDGYPSMLYSIPAALGRRRWKLKSDVAVDTELFKLLHKDLNGDEKIAAHEFFLTLAACNTVIPILMDDKSSYANGDLHEDFETIDYQGESPDEQALVAAANAYGYTLFERTSGHIVIDVNGENLRLDVLGLHEFDSVRKRMSVVIRFPDNTIKVLVKGADNSMLSILHNDLGREEFIQHTTQSHLYEYSMEGLRTLVVAAKDVTESEFELWQSRYEDASTSLTDRAVKLRQTAALIECDLKLLGATAIEDKLQDGVPEAIESLRQAGIKVWILTGDKQETAISIGLSCKLLTSDMQSIIINGNSENDCRELLSDAIAKFVTRSTQDGSQRQKLKNCENDCHDIPKTSSMLEFSEEEEEVADKPLALIIDGNSLVYILEKELESELFDLATSCNVVLCCRVAPLQKAGIVDLIKSRTNDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFRFLKRLLLVHGHWNYQRVGYMVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVLYSVIYTSIPTIFVGILDKGLSDKTLLKYPKLYGAGYRQEAYNLRLFWLTMIDTLWQSLVLFYVPLYIYKDSSIDIWSLGSLWTIAVVILVNVHLAMDVQRWVYITHAAVWGSIIISYACMVVLDSIPVFPNYWTIFHLAKSPTYWLTILLIIVVALLPRYLFKVVHQRFWPSDIQIAREAEVLRKRNGREHLSLK | 1288 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 21958870 | 21965016 | - | Sed0025287.1 | Sed03g2443 | 707930 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g2443 | 1288 | Gene3D | - | 529 | 542 | - | - | |
Sed03g2443 | 1288 | SFLD | p-type atpase | 530 | 1048 | IPR044492 | - | |
Sed03g2443 | 1288 | Gene3D | - | 236 | 402 | - | - | |
Sed03g2443 | 1288 | SUPERFAMILY | Calcium ATPase, transduction domain A | 257 | 398 | IPR008250 | - | |
Sed03g2443 | 1288 | Pfam | haloacid dehalogenase-like hydrolase | 783 | 859 | - | - | |
Sed03g2443 | 1288 | Gene3D | - | 814 | 1037 | IPR023214 | - | |
Sed03g2443 | 1288 | Pfam | Cation transport ATPase (P-type) | 663 | 739 | - | - | |
Sed03g2443 | 1288 | Gene3D | - | 556 | 569 | IPR023299 | GO:0000166(InterPro) | |
Sed03g2443 | 1288 | SFLD | Haloacid Dehalogenase | 530 | 1048 | - | - | |
Sed03g2443 | 1288 | SUPERFAMILY | HAD-like | 541 | 1043 | IPR036412 | - | |
Sed03g2443 | 1288 | Gene3D | - | 543 | 555 | IPR023214 | - | |
Sed03g2443 | 1288 | NCBIfam | phospholipid-translocating P-type ATPase | 174 | 1272 | IPR006539 | GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro) | |
Sed03g2443 | 1288 | NCBIfam | HAD-IC family P-type ATPase | 479 | 568 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Sed03g2443 | 1288 | NCBIfam | HAD-IC family P-type ATPase | 967 | 1083 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Sed03g2443 | 1288 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 1025 | 1265 | IPR032630 | - | |
Sed03g2443 | 1288 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 552 | 830 | IPR023299 | GO:0000166(InterPro) | |
Sed03g2443 | 1288 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 174 | 1264 | IPR023298 | - | |
Sed03g2443 | 1288 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 548 | 554 | IPR018303 | - | |
Sed03g2443 | 1288 | FunFam | Phospholipid-transporting ATPase IC | 543 | 555 | - | - | |
Sed03g2443 | 1288 | Pfam | Phospholipid-translocating ATPase N-terminal | 160 | 225 | IPR032631 | - | |
Sed03g2443 | 1288 | CDD | P-type_ATPase_APLT_Dnf-like | 176 | 1157 | - | - | |
Sed03g2443 | 1288 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 149 | 1272 | - | GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER) | |
Sed03g2443 | 1288 | Gene3D | - | 659 | 796 | IPR023299 | GO:0000166(InterPro) | |
Sed03g2443 | 1288 | FunFam | Phospholipid-transporting ATPase | 816 | 1037 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2443 | Sed-Chr3:21958870 | Sed14g0573 | Sed-Chr14:5720843 | 0.00E+00 | dispersed | |
Sed03g2443 | Sed-Chr3:21958870 | Sed03g0546 | Sed-Chr3:3374973 | 0.00E+00 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g2443 | K14802 | - | csv:101206692 | 2282.29 |