Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2443 ATGACTCCTGGTCATCCATTGTTGGGTTCATCAAAAACTGCATCAGTTACTGAATACAGATCCCCGTCTGGAAATCTTGGTTCTGCTGGTTTTCTATGTCGCAGTGCTTCCTTCACCTCTTCCAGTTGCGATGATGCTCAGAGTGACATTGTTGATGTGAAGGAAAACTGTGACAGCTCTTTCGGAAATAAAGGTTGGAACTGTGAGAATTCCCTCAGACGTTCCGCTTCTCTTTCTAGGAGGAGGCAGTATTATACTCTTGGCTCTCTGTTTCCTCAGCAAAAAACTTTGGGCTACCCCACCCAAGATCAAAGACGCCTGGTTTCGTGGGGTGTAATGGAGCTACGTAATATTAATGATGAAACTGCAAGTTTTGAACTTGCTAGGGTCCAGGAGAAGTTGCACAAGGCTCAAAGAAGTCGCCATAAGAGTATGCAGTTTGACGATAATTTACAGCATGAAGATAATCCAAGGTTGATATACATCAACGATCCGAGGAGAACTAATGACAAGTATGAGTTCACAGGAAATGAGATAACCACTAGCAAGTACACATTGATTACCTTCTTGCCAAAGAACCTCTTTATTCAGTTTCACCGTGTTGCCTATCTTTATTTTCTTGCTATTGCAGCTCTTAACCAGCTTCCGCCCTTGGCAGTCTTTGGGAGAACAGTATCTCTTTTCCCCCTCCTGTTTGTGCTTTGTGTTACAGCTATCAAAGATGGCTACGAGGATTGGCGAAGACACAGATCAGATCGCAATGAGAACAATAAACAGTCTCTGGTGCTTCAATCTGATGAATTCCAATTGAAAGTGTGGAAAAAGATACGAGTTGGTGAAGTCCTTAAGATTTGTGCCGATGAGGTCATTCCTTGTGATATGGTTTTATTGGGGACAAGTGATCCTAGTGGTCTTGCTTACATCCAAACAATGAATTTGGATGGTGAGTCAAACTTGAAGACAAGGTATGCTAGGCAGGAAACAGCATCAGCAGTAACTGAGGGGTGTTCGTATTCAGGTCTTATTCGATGTGAACAACCTAATAGGAACATTTATGAGTTCACTGCCAATATGGATTTCAATGGCCATAGGTTTCCCCTTAGCCAGTCAAACATAGTCTTGCGTGGTTGTCAGCTGAAGAACACTGAATGGATTATTGGGGTGGCTGTCTATGCTGGACAAGAAACAAAAGCCATGTTAAATAGTGCAGTGTCTCCTGCAAAGCGAAGTAAACTGGAGGGTTACATGAACAGGGAAACCTTGTGGTTGTCTATTTTCCTCTTTATCATGTGTCTAGTTGTGGCTCTTGGAATGGGCAAATGGCTTGCTCGCCACAAGGACCGGCTTGATACCTTGCCATATTATAGGAGAAGGTACTTCACAAATGGGGCAGACAATGGTAAGAAGTACAGGTTTTATGGAATACCTATGGAGACGTTTTTCTCCTTTTTGAGTTCTGTTATAGTGTTTCAGATAATGATACCGATATCCCTTTATATTACTATGGAGATGGTGAGACTGGGCCAGTCATATTTCATGATTGAAGATAAGCATATGTACTGCAGAAGCTCTTGCTCAAGGTTCCAGTGTAGATCGTTGAATATTAATGAAGATCTTGGTCAAGTTCGGTACATATTTTCTGATAAAACGGGAACACTTACTGAAAATAAAATGGAATTCAAAAGAGCTAGTGTGCATGGTAAGAATTACGGGAACAACTTCTCTGACGGATATCCATCAATGTTGTATTCCATTCCAGCAGCTTTAGGGAGGAGGAGGTGGAAACTTAAATCTGACGTTGCTGTTGATACTGAACTTTTCAAATTATTGCACAAGGACCTAAACGGTGATGAAAAGATTGCTGCACATGAATTTTTTCTTACTTTGGCTGCATGCAATACTGTAATTCCTATTCTCATGGATGACAAATCTAGTTATGCGAATGGTGATTTGCACGAGGATTTTGAAACTATCGACTATCAGGGCGAATCCCCTGACGAGCAAGCACTAGTTGCTGCAGCCAATGCTTATGGATATACCCTTTTTGAGCGCACGTCCGGGCACATTGTTATAGATGTCAATGGTGAGAACTTAAGATTGGATGTTTTGGGTTTACATGAGTTTGATAGTGTTCGCAAGAGAATGTCTGTTGTCATCAGATTCCCTGACAACACTATAAAGGTTTTGGTGAAAGGTGCTGATAATTCAATGTTGAGTATTTTACATAATGACTTGGGTAGGGAAGAATTTATCCAGCATACTACTCAAAGCCATTTGTATGAATATTCAATGGAAGGCTTGCGAACACTTGTAGTTGCTGCCAAAGATGTGACAGAGTCTGAATTTGAGCTGTGGCAGAGCAGATATGAGGATGCCAGTACTTCACTAACTGATAGAGCCGTAAAACTGCGTCAGACAGCAGCCCTTATAGAATGTGATCTTAAGCTTTTGGGAGCAACTGCTATTGAGGACAAGCTTCAAGATGGTGTACCTGAAGCCATTGAGTCTCTTCGACAGGCGGGAATAAAGGTGTGGATTCTGACGGGAGATAAGCAGGAGACGGCCATATCAATTGGTCTCTCCTGCAAACTGCTGACTTCAGACATGCAGTCAATTATTATCAATGGAAACTCCGAGAACGATTGCAGGGAACTTTTAAGTGATGCTATAGCCAAATTTGTTACACGATCAACACAGGACGGAAGTCAAAGACAGAAGCTGAAGAATTGTGAGAATGACTGCCATGATATACCGAAGACATCTAGCATGCTGGAGTTTAGTGAAGAAGAAGAAGAAGTGGCTGATAAACCGCTAGCTCTAATAATTGATGGAAACAGTTTGGTGTACATTTTGGAGAAGGAATTGGAGTCAGAGCTTTTTGACCTTGCAACTTCATGCAATGTTGTGCTATGTTGTCGTGTTGCACCTCTGCAGAAAGCTGGAATTGTTGATTTGATCAAGAGTAGAACTAATGATATGACATTGGCAATTGGAGATGGGGCCAATGATGTCTCAATGATTCAGATGGCCGATGTAGGCGTTGGTATATGTGGTCAGGAAGGGCGTCAAGCAGTAATGGCATCTGATTTTGCCATGGGACAATTTCGGTTTTTGAAAAGATTACTTCTAGTGCATGGACATTGGAACTATCAACGCGTAGGCTACATGGTTCTTTACAATTTTTACCGCAATGCTGTTTTTGTCTTGATGCTCTTCTGGTACATTCTATGCACAGCATTCTCAACAACTTCAGCTCTGACTGATTGGAGCAGTGTGCTTTACTCTGTTATTTACACGTCCATCCCTACTATTTTCGTTGGTATTCTGGATAAAGGTTTGAGTGATAAAACCCTTCTAAAATATCCTAAGCTCTATGGTGCTGGCTATAGACAGGAGGCATACAATTTGCGTCTCTTTTGGTTGACGATGATCGATACCCTGTGGCAGAGTCTTGTTCTCTTCTATGTGCCATTATACATTTATAAGGACAGTTCCATTGATATATGGAGCTTGGGAAGTTTGTGGACTATAGCGGTTGTTATCCTTGTAAATGTACATTTGGCGATGGATGTTCAACGCTGGGTATACATTACACATGCTGCAGTTTGGGGATCCATTATTATATCATATGCCTGCATGGTGGTGTTGGATTCGATACCCGTTTTTCCAAATTATTGGACGATCTTTCATCTGGCGAAGTCCCCGACGTATTGGTTGACTATATTGCTCATAATAGTTGTTGCATTGCTTCCGCGGTATCTTTTTAAAGTTGTGCACCAAAGATTTTGGCCATCAGATATTCAGATAGCCAGGGAAGCCGAGGTACTGAGAAAACGAAATGGTCGCGAGCACTTGAGTTTAAAGTGA 3867 41.79 MTPGHPLLGSSKTASVTEYRSPSGNLGSAGFLCRSASFTSSSCDDAQSDIVDVKENCDSSFGNKGWNCENSLRRSASLSRRRQYYTLGSLFPQQKTLGYPTQDQRRLVSWGVMELRNINDETASFELARVQEKLHKAQRSRHKSMQFDDNLQHEDNPRLIYINDPRRTNDKYEFTGNEITTSKYTLITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNKQSLVLQSDEFQLKVWKKIRVGEVLKICADEVIPCDMVLLGTSDPSGLAYIQTMNLDGESNLKTRYARQETASAVTEGCSYSGLIRCEQPNRNIYEFTANMDFNGHRFPLSQSNIVLRGCQLKNTEWIIGVAVYAGQETKAMLNSAVSPAKRSKLEGYMNRETLWLSIFLFIMCLVVALGMGKWLARHKDRLDTLPYYRRRYFTNGADNGKKYRFYGIPMETFFSFLSSVIVFQIMIPISLYITMEMVRLGQSYFMIEDKHMYCRSSCSRFQCRSLNINEDLGQVRYIFSDKTGTLTENKMEFKRASVHGKNYGNNFSDGYPSMLYSIPAALGRRRWKLKSDVAVDTELFKLLHKDLNGDEKIAAHEFFLTLAACNTVIPILMDDKSSYANGDLHEDFETIDYQGESPDEQALVAAANAYGYTLFERTSGHIVIDVNGENLRLDVLGLHEFDSVRKRMSVVIRFPDNTIKVLVKGADNSMLSILHNDLGREEFIQHTTQSHLYEYSMEGLRTLVVAAKDVTESEFELWQSRYEDASTSLTDRAVKLRQTAALIECDLKLLGATAIEDKLQDGVPEAIESLRQAGIKVWILTGDKQETAISIGLSCKLLTSDMQSIIINGNSENDCRELLSDAIAKFVTRSTQDGSQRQKLKNCENDCHDIPKTSSMLEFSEEEEEVADKPLALIIDGNSLVYILEKELESELFDLATSCNVVLCCRVAPLQKAGIVDLIKSRTNDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFRFLKRLLLVHGHWNYQRVGYMVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVLYSVIYTSIPTIFVGILDKGLSDKTLLKYPKLYGAGYRQEAYNLRLFWLTMIDTLWQSLVLFYVPLYIYKDSSIDIWSLGSLWTIAVVILVNVHLAMDVQRWVYITHAAVWGSIIISYACMVVLDSIPVFPNYWTIFHLAKSPTYWLTILLIIVVALLPRYLFKVVHQRFWPSDIQIAREAEVLRKRNGREHLSLK 1288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21958870 21965016 - Sed0025287.1 Sed03g2443 707930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2443 1288 Gene3D - 529 542 - -
Sed03g2443 1288 SFLD p-type atpase 530 1048 IPR044492 -
Sed03g2443 1288 Gene3D - 236 402 - -
Sed03g2443 1288 SUPERFAMILY Calcium ATPase, transduction domain A 257 398 IPR008250 -
Sed03g2443 1288 Pfam haloacid dehalogenase-like hydrolase 783 859 - -
Sed03g2443 1288 Gene3D - 814 1037 IPR023214 -
Sed03g2443 1288 Pfam Cation transport ATPase (P-type) 663 739 - -
Sed03g2443 1288 Gene3D - 556 569 IPR023299 GO:0000166(InterPro)
Sed03g2443 1288 SFLD Haloacid Dehalogenase 530 1048 - -
Sed03g2443 1288 SUPERFAMILY HAD-like 541 1043 IPR036412 -
Sed03g2443 1288 Gene3D - 543 555 IPR023214 -
Sed03g2443 1288 NCBIfam phospholipid-translocating P-type ATPase 174 1272 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Sed03g2443 1288 NCBIfam HAD-IC family P-type ATPase 479 568 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed03g2443 1288 NCBIfam HAD-IC family P-type ATPase 967 1083 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed03g2443 1288 Pfam Phospholipid-translocating P-type ATPase C-terminal 1025 1265 IPR032630 -
Sed03g2443 1288 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 552 830 IPR023299 GO:0000166(InterPro)
Sed03g2443 1288 SUPERFAMILY Calcium ATPase, transmembrane domain M 174 1264 IPR023298 -
Sed03g2443 1288 ProSitePatterns E1-E2 ATPases phosphorylation site. 548 554 IPR018303 -
Sed03g2443 1288 FunFam Phospholipid-transporting ATPase IC 543 555 - -
Sed03g2443 1288 Pfam Phospholipid-translocating ATPase N-terminal 160 225 IPR032631 -
Sed03g2443 1288 CDD P-type_ATPase_APLT_Dnf-like 176 1157 - -
Sed03g2443 1288 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 149 1272 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Sed03g2443 1288 Gene3D - 659 796 IPR023299 GO:0000166(InterPro)
Sed03g2443 1288 FunFam Phospholipid-transporting ATPase 816 1037 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2443 Sed-Chr3:21958870 Sed14g0573 Sed-Chr14:5720843 0.00E+00 dispersed
Sed03g2443 Sed-Chr3:21958870 Sed03g0546 Sed-Chr3:3374973 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2443 K14802 - csv:101206692 2282.29