Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2444 ATGCCGGAGTACGACGCCGGTGACGGGGTTCTCTTCGGGAAATACGAGGTCGGGAAGCTTCTGGGCCGTGGAGCGTTCGCGAAGGTGTACCACGGCAGAGACGTCGCCACCGGGCAGAGCGTGGCCATTAAAGCGGTGAACAAGCTCAAAGTGTTGAAGAGCGGCTTCACGGGGCAGGTTAAGAGAGAGATCGCTATCATGCGCCGCCTCCGCCATCCCAACGTGGTCCGCCTCTTTGAAGTTCTGGCCACGAAGACGAAGATTTATCTGGTCATGGAGTTCGCCAAAGGGGGCGAACTCTTCGCCAAGCTTTCCAAGGGGAGATTCAGCGAGAATCTCAGCCGCCGGTACTTCAATCAGTTGATCACCGCCGTCGGGTACTGCCACTCCAGAGGAATATTCCATCGCGACTTGAAGCCCGAGAATCTCCTTCTGGACGACAATTTCGATCTCAGAGTATCGGATTTCGGACTCTCCGCCTTCGCGGATCAGATCGGACCCGACGGGCTGCTCCACACGCTATGCGGAACTCCGGCCTACGTGGCGCCGGAGATGCTCGCCAAGAAAGGCTACGACGGCGCCAAGATCGACGTCTGGTCCTGCGGCGTAATCCTCTACGTTCTCACCGTGGGGTATCTTCCCTTCAACGATTCTAATTTAATGGCTATGTATCGGAAGATTTACAGAGGCGATTTCCGCTGCCCGAAATGGACCTCGCCGGATCTGCGCCGGTTACTCTCCCGCCTTCTGGATCCGAATCCGGCGACGAGGATCACCGTCGATGAGATTCATTTAGATCCGTGGTTCATGAAAGGATTTGATCAGGAGGAGAAGCTTCAAGTGCCCGATGATGACCCTTGCGGCCATTCCGTTTCCAACAATGCCAAATGTTTGAATGCTTTTGATCTCATCTCTTTCTCCCCTGGCTTTGATTTGACGGGCTTGATGAAGGACGCGGAGTTTTCGTCCGCCGTCGAGAGGTTCCTCTCCGCCGAGTCGCCGGAGATGATCATTCTGACCGTGGAGGAGCTTTCCAAGGCGGAGAACGCGGCGGTGGAGAAGAATGCCTGGGGAGCGAAAGTGGAGGCCCACGACGGCGGTTTCGTCGCCGTTATTGAGATTTTCCGACTGACGGAGGAATTGGTGGTGGTTGAAATCAAGAACAGAGTGAGGGAGATTGATCAAATTTGGATGGATAAATTGAGACCCAAACTCGACTGTTTGATCTACCGGTCGGATTGA 1242 55.07 MPEYDAGDGVLFGKYEVGKLLGRGAFAKVYHGRDVATGQSVAIKAVNKLKVLKSGFTGQVKREIAIMRRLRHPNVVRLFEVLATKTKIYLVMEFAKGGELFAKLSKGRFSENLSRRYFNQLITAVGYCHSRGIFHRDLKPENLLLDDNFDLRVSDFGLSAFADQIGPDGLLHTLCGTPAYVAPEMLAKKGYDGAKIDVWSCGVILYVLTVGYLPFNDSNLMAMYRKIYRGDFRCPKWTSPDLRRLLSRLLDPNPATRITVDEIHLDPWFMKGFDQEEKLQVPDDDPCGHSVSNNAKCLNAFDLISFSPGFDLTGLMKDAEFSSAVERFLSAESPEMIILTVEELSKAENAAVEKNAWGAKVEAHDGGFVAVIEIFRLTEELVVVEIKNRVREIDQIWMDKLRPKLDCLIYRSD 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22435935 22437566 + Sed0016137.1 Sed03g2444 707931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2444 413 Pfam NAF domain 296 354 IPR004041 GO:0007165(InterPro)
Sed03g2444 413 FunFam Non-specific serine/threonine protein kinase 6 290 - -
Sed03g2444 413 Gene3D Kinase associated domain 1, KA1 294 411 - -
Sed03g2444 413 Pfam Protein kinase domain 15 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2444 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2444 413 SUPERFAMILY Protein kinase-like (PK-like) 11 284 IPR011009 -
Sed03g2444 413 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2444 413 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 388 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed03g2444 413 Gene3D Transferase(Phosphotransferase) domain 1 95 275 - -
Sed03g2444 413 ProSiteProfiles NAF domain profile. 293 317 IPR018451 GO:0007165(InterPro)
Sed03g2444 413 Gene3D Phosphorylase Kinase; domain 1 7 94 - -
Sed03g2444 413 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
Sed03g2444 413 FunFam Non-specific serine/threonine protein kinase 7 94 - -
Sed03g2444 413 CDD CIPK_C 299 406 - -
Sed03g2444 413 SMART serkin_6 15 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2444 Sed-Chr3:22435935 Sed05g3809 Sed-Chr5:45736155 3.10E-140 dispersed
Sed14g0586 Sed-Chr14:5909432 Sed03g2444 Sed-Chr3:22435935 1.70E-191 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78935 PF00069 Pkinase 3.90E-70 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2444 - - - 0.0