Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2497 ATGGCTTCCCAAACCGAGCCCTGGCTCATGGAAAATGGAACCGTGAAGCGGTTAACCAAAGAGAACCGACAGGGGACTGGACGAAGCCGGACCGCCCACAACATGTCGTCCTCGTCCCTTCGCAGAAAGTCCGATTTAACCCTTGTCTCCAAGATCCAACTCGGCTGCCTCCGCAACTTCCTTGCCAATCTTCAGGAGGTTATTTTGGGAACCAAGCTTTCCATTCTTTTCCCTGCTATTCCGTTTGCTATTGTGGCTCACAGTTTTGGCTTTGCAAGACCTTGGATTTTTGCATTGAGCTTGCTTGGCCTCACGCCATTGGCTGAACGTGTTAGCTTTCTCACAGAGCAAATCGCTTATTTCACTGGTCCAACAGTTGGGGGACTGTTGAATGCAACATGTGGAAATGCAACGGAGTTGATAATTGCAATTCTTGCACTTACACAAGGAAAGATAGACGTGGTGAAGTATTCTCTGTTGGGTTCTGTTCTTTCCAATCTTCTTCTTGTTCTTGGAACCTCACTCTTCTGTGGTGGCATTGTTAAATCCGAACAGACTTATGACAGAAGACAAGCTGATGTGAATTCACTGATGCTGATGCTTTCGTTGCTGTGCCATTTATTGCCGTTATTGTTTGGTTACGCCGCATCGTCCGCGGTCACGGCCGCGGCCTCCACCCTCCACCTTTCCAGAGCCAGCAGCATTGTTATGCTTGCCGCTTACCTTGCTTACTTGGTCTTCCAACTCTGGACCCACCGCCAGTTATTTGAAGCCGAGGAGGGTGAAGACGACGACGTTCCAGGAGAAGAGGCAGTGATTGGATTCTGGAGTGCATTTGCCTGGCTTGTCGGGATGACACTTCTCATTGCTTTGCTATCTGAATACGTTGTCAACACAATTGAGGAAGCATCAACTACTTGGGGTTTGTCTGTGAGTTTCCTCAGCATAATCTTGCTTCCTATAGTCGGAAACGCAGCCGAACACGCTGGAGCCATCATATTTGCCTTCAAGAACAAGTTGGACATTTCTTTGGGGGTTGCTTTGGGGTCAGCAACACAAATTGCACTGTTTGTGATTCCACTGTGTGTGATCGTAGCTTGGACAATGGGAGTAGACATGGATCTGAATTTTAACTTAATGGAAACGGGGTCGCTTGGATTGGCCATTATTGCAACGGCATTCACTTTACAAGATGGAACCTCTCACTATATCAAAGGCCTTATTCTTCTGCTTTGCTACATTATCATTGCTGCTTGCTTCTTTGTCTCCAACTCAATTCAAGATGGTAACAATACTCCAAACTTAGGAATCCAATCAACAAACCAACAAATCTTCAAAGCCTAA 1344 46.73 MASQTEPWLMENGTVKRLTKENRQGTGRSRTAHNMSSSSLRRKSDLTLVSKIQLGCLRNFLANLQEVILGTKLSILFPAIPFAIVAHSFGFARPWIFALSLLGLTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIAILALTQGKIDVVKYSLLGSVLSNLLLVLGTSLFCGGIVKSEQTYDRRQADVNSLMLMLSLLCHLLPLLFGYAASSAVTAAASTLHLSRASSIVMLAAYLAYLVFQLWTHRQLFEAEEGEDDDVPGEEAVIGFWSAFAWLVGMTLLIALLSEYVVNTIEEASTTWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIALFVIPLCVIVAWTMGVDMDLNFNLMETGSLGLAIIATAFTLQDGTSHYIKGLILLLCYIIIAACFFVSNSIQDGNNTPNLGIQSTNQQIFKA 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30291415 30297234 - Sed0015413.1 Sed03g2497 707984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2497 447 MobiDBLite consensus disorder prediction 13 39 - -
Sed03g2497 447 Gene3D - 124 270 IPR044880 -
Sed03g2497 447 Gene3D - 271 422 IPR044880 -
Sed03g2497 447 FunFam Vacuolar cation/proton exchanger 266 422 - -
Sed03g2497 447 Pfam Sodium/calcium exchanger protein 95 250 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2497 447 Pfam Sodium/calcium exchanger protein 278 421 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g2497 447 NCBIfam calcium/proton exchanger 78 421 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Sed03g2497 447 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 21 424 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1162 Sed-Chr1:8643612 Sed03g2497 Sed-Chr3:30291415 1.60E-100 dispersed
Sed02g0224 Sed-Chr2:35491310 Sed03g2497 Sed-Chr3:30291415 9.40E-156 dispersed
Sed03g2497 Sed-Chr3:30291415 Sed08g2887 Sed-Chr8:39978048 8.00E-94 dispersed
Sed03g2497 Sed-Chr3:30291415 Sed01g0605 Sed-Chr1:4335970 4.20E-95 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2497 K07300 - csv:101213857 735.717