Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2513 ATGACAAACACCCAGCTAAGACGATGTCTCATTCATCTTTTCCGACAATTCCCAAGAAATTGGTTGGGCGAAGATGAACAAGCTTTGAATAAAGAAATATGCAGAAGAAGAGACGAAAACCTCAACTCAGTGTTACATATCAGCCTCTGTTTCAAAATCCCTCTCAACACCAACACAAGAGTGTTACACTCTCCCGAATACCAGACTGAAATGTCAGTATCGGCACCGACCCAAGAGGGGCTTACGTTCTGGCAGTACATGTTAGCCGGATCAATAGCAGGGTCAGCAGAGCACATGGCGATGTTTCCAGTGGACACAGTGAAAACCCGAATACGACCCGTGGGAGGATCATGGACAGTCCGACAAGCAGTGGGATCGATTCTGAAAGTGGAAGGTCCGTGCGGGATCTACCGGGGAATCAGAGCAATGGGCATTGGAGCAGGGCCGGCACACGCTGTGTACTTCTCGGTATACGAATTGTGCAAAGAGGGGTTGATTTCGATTGGGAATGGGAATGGGAATAGCCCATTTGGGCATGCAGTGTCGGGAGTGTGTGCGACAGTGGCGAGCGACGCAGTGTTGACGCCAATGGATGTGGTGAAGCAGAGGCTGCAATTGAGGAGGAGTCCATACAAGGGAGTGGGGGAGTGTGTGAGGAGGGTTATGGTTGAGGAAGGAATAGGGGCGTTGTATGCTTCATATAGGACTACAGTATTGATGAATGCGCCGTACACGGCTGCCCATTTTGCCATTTATGAAGGTGTGAAAAGGGGATTGTTGAAGGACAAGGATGAAGGGTTGGTTGTTCATGCTACAGCCGGTGCGCCTACCGGCTCTCTTGCTGGTCTTCTTACCACGCCATTGGACGTTGTCAAAACTCAGCTGCAATGCCAAGGCGTGTGTGGGTGCGACAGATTATCAAACAGTTCAATAGGGTACGTACTTGGGCATGTGGTGAAGAAGGATGGGTACAGAGGCCTGATGAGAGGATGGATTCCAAGGATGCTGTTCCATGCCCCAGCTGCTGCAATTTGCTGGTCCACCTACGAAGCTTCAAAAGCCTTCTTTCAACAACTCCACCATTAG 1086 50.09 MTNTQLRRCLIHLFRQFPRNWLGEDEQALNKEICRRRDENLNSVLHISLCFKIPLNTNTRVLHSPEYQTEMSVSAPTQEGLTFWQYMLAGSIAGSAEHMAMFPVDTVKTRIRPVGGSWTVRQAVGSILKVEGPCGIYRGIRAMGIGAGPAHAVYFSVYELCKEGLISIGNGNGNSPFGHAVSGVCATVASDAVLTPMDVVKQRLQLRRSPYKGVGECVRRVMVEEGIGALYASYRTTVLMNAPYTAAHFAIYEGVKRGLLKDKDEGLVVHATAGAPTGSLAGLLTTPLDVVKTQLQCQGVCGCDRLSNSSIGYVLGHVVKKDGYRGLMRGWIPRMLFHAPAAAICWSTYEASKAFFQQLHH 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35035691 35039961 + Sed0014017.1 Sed03g2513 708000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2513 361 Gene3D Mitochondrial carrier domain 208 361 IPR023395 -
Sed03g2513 361 PRINTS Mitochondrial carrier protein signature 86 99 IPR002067 GO:0055085(InterPro)
Sed03g2513 361 PRINTS Mitochondrial carrier protein signature 189 207 IPR002067 GO:0055085(InterPro)
Sed03g2513 361 PRINTS Mitochondrial carrier protein signature 231 249 IPR002067 GO:0055085(InterPro)
Sed03g2513 361 PRINTS Mitochondrial carrier protein signature 274 296 IPR002067 GO:0055085(InterPro)
Sed03g2513 361 PRINTS Mitochondrial carrier protein signature 99 113 IPR002067 GO:0055085(InterPro)
Sed03g2513 361 Pfam Mitochondrial carrier protein 175 262 IPR018108 -
Sed03g2513 361 Pfam Mitochondrial carrier protein 81 166 IPR018108 -
Sed03g2513 361 Pfam Mitochondrial carrier protein 266 358 IPR018108 -
Sed03g2513 361 ProSiteProfiles Solute carrier (Solcar) repeat profile. 174 258 IPR018108 -
Sed03g2513 361 PANTHER MITOFERRIN-1-RELATED 74 358 - GO:0015093(PANTHER)|GO:0031966(PANTHER)|GO:0048250(PANTHER)
Sed03g2513 361 Gene3D Mitochondrial carrier domain 60 207 IPR023395 -
Sed03g2513 361 ProSiteProfiles Solute carrier (Solcar) repeat profile. 81 164 IPR018108 -
Sed03g2513 361 SUPERFAMILY Mitochondrial carrier 80 350 IPR023395 -
Sed03g2513 361 ProSiteProfiles Solute carrier (Solcar) repeat profile. 265 355 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2513 Sed-Chr3:35035691 Sed05g3793 Sed-Chr5:45621321 1.10E-109 dispersed
Sed03g2513 Sed-Chr3:35035691 Sed01g0064 Sed-Chr1:652971 4.30E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2513 K15113 - csv:101210464 461.84