Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2541 ATGGAGGTCGATACTAATCCAGGGAAATCGGCCAAACAAATTGGGGGCGGTCAGGTTTGTCAGATCTGCAGCGATTCCGTCGGCACCACCGCCGACGGCGAGCCCTTTGTTGCTTGTGATGTTTGTGCGTTTCCGGTTTGCCGTCCTTGTTACGAGTACGAGAGGAAAGATGGGAATCAGTCCTGCCCACAATGCAAGACCAAATACAAGTGGCATAAAGGAAGTCCTACAATTATTGGAGAAGCAGTGGAAGATGGGGATGGTAATGGAGGGACAGGGGCACAAGAAAGACACCATAAGTTACCTGAGCGCACTCTTAGTTGGGATACCAATTATGATAAGGAGGGATCTTTTAATCATATTCCTTTGCTTACTACTGGAAGATCTGTTTCTGGAGAATTGTCGGCTGCATCTCCTGAGCGGCTCTCCATGGCGTCTCCTGAAAGTGGGAGCAGGGCTAACTATAGAATCATGGATCAATTGAGAGATTCTGGATCAGCTAGGTTTGGAAATGTGGCCTGGAAAGAGAGAATCGATAGTTGGAAGGTGAAGCAGGACAAGAGTGTGCCGCCGATGAGTGTCAGTCATGCACCTTCTGAAGGTAGGGGTGGTGCAGATTTTGATGCCAGCACTGATGTCGTTATCGATGATTCTTTACTAAATGATGAAGCCCGCCAGCCTCTTTCGAGGAAGGTTTCTATTCCATCTTCTAAGATTAACCCTTATAGGATGGTCATAGTTCTGCGGCTTGTTATTCTCTGCATCTTCTTGCACTACCGGATTACAAATCCAGTTCCCAATGCCTTTGCTCTGTGGTTAATATCAGTGATTTGTGAGATTTGGTTTGCTGTATCGTGGATTTTGGATCAGTTCCCCAAATGGCTGCCAGTCAATCGTGAGACCTATCTTGATAGGCTTGCTCTACGATATGATCGTGAAGGAGAGCCATCTCAGTTGGCTGCTGTCGACATATTTGTCAGTACTGTCGACCCTTTGAAAGAACCTCCTCTTGTCACAGCCAATACAGTCCTATCAATTCTTGCCGTGGACTATCCAGTTGATAAAGTTTCTTGCTATGTATCTGATGATGGAGCTGCTATGTTAACATTTGAAGCGTTGTCTGAAACATCAGAATTTGCAAGAAAATGGGTTCCTTTCTGTAAGAAGTACAGCATTGAGCCACGAGCACCAGAGTGGTATTTTGCTCAAAAGATTGATTACTTAAAGGACAAGACTCATCCATCATTTGTGAAGGAGCGGCGAGCAATGAAGAGAGAATATGAAGAGTTTAAAATTCGGGTCAATGGACTTGTTGCTAAGGCACAGAAAGTTCCTGATGAAGGGTGGGTCATGCAAGATGGTACACCATGGCCTGGAAACAACACTAGAGATCACCCAGGAATGATTCAGGTTTTCCTAGGGCACAGTGGAGGACTTGATACTGACGGTAATGAGCTCCCACGTTTAGTTTATGTTTCTCGTGAGAAGCGTCCTGGTTTCGAACATCACAAAAAGGCTGGTGCTATGAATTCACTTGTTCGTGTTTCTGCTGTTCTTACCAATGGACCCTTCATGTTAAATCTTGATTGTGATCACTACATCAACAACAGTAAAGCGTTACGGGAAGCTATGTGCTTTCTGATGGATCCTAATCTTGGAAAATCAGTGTGCTATGTTCAGTTTCCCCAGAGGTTTGATGGGATTGATAGAAATGATAGATATGCTAATCGTAACACTGTTTTCTTTGATATCAATCTTCGAGGCTTGGATGGCATCCAAGGTCCGGTTTATGTCGGAACGGGATGTGTTTTCAATCGAACTGCATTGTATGGCTATGAACCCCCCATCAAGCCCAAGCATAAAAAACCAGGGCTCTTCTCTAGTTGCTTCGGGAAATCAAAGAAGAAAAGTTCTAAATCAAAAAGGAAGGATTCTGATAAAAAGCAATCAAACAAAAATGTCGATCCCACTGTGCCAATATTCAACCTTGAGGATATTGAGGAAGGAGTAGAAGGTGCTGGGTTTGACGACGAGAAATCACTACTAATGTCACAAATGAGCCTAGAGAAAAGGTTTGGTCAATCAGCTGTATTTGTTGCTTCCACACTAATGGAGAATGGTGGGGTGCCCCAGTCCGCCACTCCGGAATCTCTTCTTAAAGAAGCAATTCATGTCATCAGTTGTGGATACGAGGACAAAACAGACTGGGGAAGTGAAATTGGATGGATCTATGGTTCTGTCACAGAAGATATTTTGACAGGGTTCAAGATGCATGCTCGTGGTTGGAGATCAATCTATTGTATACCTGATCGCCCTGCATTTAAAGGATCTGCTCCTATTAATCTTTCCGATCGTCTAAACCAAGTGCTTCGGTGGGCGTTAGGTTCGGTTGAAATTCTTTTCAGTCGGCATTGTCCTATGTGGTATGGTTATGGTGGACGGTTGAAATGGCTCGAGAGATTTGCTTATGTTAACACCACCATTTACCCAATTACATCCATTCCTCTTCTTGCCTATTGTACCTTACCTGCAATATGTCTGCTCACTGGAAAGTTCATTATTCCTCAGATTAGCAATCTTGCAAGTATTTGGTTCATTTCTCTCTTTCTTTCCATCTTTGCCACTGGTATTCTGGAAATGAGATGGAGTGGAGTCGGAATCGATGAGTGGTGGAGAAACGAGCAGTTCTGGGTTATTGGAGGTGTGTCAGCCCATCTATTTGCTGTTTTCCAAGGTTTGCTCAAAGTTCTTGCTGGAATCGACACCAACTTTACCGTTACTTCGAAAGCTTCCGATGAAGATGGAGATTTTGCTGAGCTTTACATGTTCAAGTGGACCACTCTCCTCATTCCCCCAACTACTCTCCTAATCATCAACATTGTTGGAGTTGTTGCTGGAATTTCTTATGCCATCAACAGTGGCTATCAATCTTGGGGTCCCCTTTTCGGCAAACTGTTCTTCGCTTTCTGGGTGATTATTCATCTGTATCCCTTCCTCAAAGGTCTGATGGGTCGCCAGAACCGAACTCCCACGATCGTTGTTGTATGGTCCATCCTCCTTGCCTCAATCTTCTCCCTTTTATGGGTTCGAATTGATCCCTTCACCACCCGGGTAACTGGTCCTGATGTCGAACAGTGCGGAATCAACTGCTGA 3153 44.5 MEVDTNPGKSAKQIGGGQVCQICSDSVGTTADGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKWHKGSPTIIGEAVEDGDGNGGTGAQERHHKLPERTLSWDTNYDKEGSFNHIPLLTTGRSVSGELSAASPERLSMASPESGSRANYRIMDQLRDSGSARFGNVAWKERIDSWKVKQDKSVPPMSVSHAPSEGRGGADFDASTDVVIDDSLLNDEARQPLSRKVSIPSSKINPYRMVIVLRLVILCIFLHYRITNPVPNAFALWLISVICEIWFAVSWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKTHPSFVKERRAMKREYEEFKIRVNGLVAKAQKVPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFEHHKKAGAMNSLVRVSAVLTNGPFMLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKPKHKKPGLFSSCFGKSKKKSSKSKRKDSDKKQSNKNVDPTVPIFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCIPDRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPMWYGYGGRLKWLERFAYVNTTIYPITSIPLLAYCTLPAICLLTGKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINIVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1050
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40094076 40100649 + Sed0004499.1 Sed03g2541 708028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2541 1050 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 230 1019 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Sed03g2541 1050 SUPERFAMILY Nucleotide-diphospho-sugar transferases 336 852 IPR029044 -
Sed03g2541 1050 ProSiteProfiles Zinc finger RING-type profile. 20 66 IPR001841 -
Sed03g2541 1050 MobiDBLite consensus disorder prediction 623 656 - -
Sed03g2541 1050 Pfam Cellulose synthase 322 1043 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Sed03g2541 1050 Pfam Zinc-binding RING-finger 16 86 IPR027934 -
Sed03g2541 1050 CDD mRING-HC-C4C4_CesA 18 68 - -
Sed03g2541 1050 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 459 613 IPR029044 -
Sed03g2541 1050 FunFam Cellulose synthase 439 613 - -
Sed03g2541 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 93 IPR013083 -
Sed03g2541 1050 SUPERFAMILY RING/U-box 13 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2541 Sed-Chr3:40094076 Sed07g0652 Sed-Chr7:4913173 0.00E+00 dispersed
Sed03g2541 Sed-Chr3:40094076 Sed12g2280 Sed-Chr12:33014775 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2541 K10999 - csv:101211779 2099.32