Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2560 ATGTCATCACCAAACTTCCAAACCCTTCTTCTCCATTTCCCTTCTTCCATTTCCCAAAGCTTCTCTGCCCTTTTCTTAGCTCTTCTTCTCCTCTCCATTTTCTCCTTCTTCCTCCACCCCGGCGGCCAAGCTTGGGCCATTTCCAAGTCCAAGACGGCCGCCGCCGCCATCCCGGGCCCGTCCGGCCTCCCCTTCATGGGCCTCCTCCACATCTTCACTCTCTCAAAAACCCCTCACAGAGCCCTCTCTGCTCTTTCCACCAAATTCCAAGCCCACCCTTTGATGGCCTTTTCTGTGGGCTTAACCAAATTTGTGATCTCAAGCCACCCTGATTTTGCCAAAGAAATTCTCAACAGCCCTTCCTTTGCTGACAGGCCTGTCAAGGAATCTGCCTATGAACTTCTTTTCCACAGAGCAATGGGATTTGCTCCATATGGTGAGTATTGGAGGAACTTGAGAAGGATTTCATCCACTTACATGTTTAGTCCCAAAAGAATAAATGCTTTTGAAGGGTTTAGGAGGGAAGTTGGAGAGAAAATGATAAGTGAAATTGAGAAATCCATTGGTTTGAAAGGGGAGGTGAAGGTTAAGGAGATTCTTCACTTTGGGTCTTTGAATAATGTGATGATGACTGTTTTTGGAAAGAGTTATGAGTTTGGTGAAATGGGGAATAATAATGGTGATGGGGTTGAGCTTGAGGAGTTGGTGAGGGAAGGGTATGAGTTGCTTGGGATTCTCAATTGGAGTGACCATTTTCCAATTTTGGGTTGGTTGGATCTACAAGGTGTGAGGAGAAGGTGTAGGGTTTTGGCTGCTAAAGTGAATTTGTTTGTGGGAAAAATCATTGAGGAGCATAGAACTAAGAGGGAAGTTGAGGGACATCAACAAGGAGATCTAGAACATGAATATGATAGAGACTTTGTTGATGTTCTACTTGATTTGGAGAAAGATGACAAGCTCTCTGATTCTGACATGATTGCTGTTCTTTGGGAAATGATTTTTCGAGGAACTGACACAGTAGCAATACTCTTGGAATGGATTTTGGCACGAATGGTTTTACACCCAGAAATCCAAGCCAAAGCCCAATACGAAATCGATTCAATTGTAGGCAAAAACCCCATATTAGATTCTGATGTCCCAAATCTTCCATTTCTTCAATCAATTGTGAAGGAGTGCTTAAGAATGCACCCACCGGGCCCGCTTTTGTCGTGGGCTCGTCTTGCTGTCGACAACGTGCACATCGGAGGAAGGTTGATACCGGCCGGGACCACAACGATGGTGAACATGTGGGCTATAACGCACAATGAGAAAGTTTGGAGGGAGGCAGAAAAGTTTGAGCCTTATAGGTTCATGGAGGAAGGAATAAGTGTTATGGGAAGTGATTTGAGATTGGCTCCATTTGGGGCAGGGAGAAGGGTTTGCCCTGGAAAAGCAATGGGATTGGCCAGTGTTCATCTTTGGTTGGCTCAGTTACTTCAAGCTTTCAAATGGGTTCCATCTGGAAATAGCATTAATGATGGAGTTGACTTGTCAGAATGCCTTAAACTCTCTTTGGAAATGGAAACACCATTGGTTTGCAAAGCTATTCCTAGGGTTGGTTGA 1602 44.88 MSSPNFQTLLLHFPSSISQSFSALFLALLLLSIFSFFLHPGGQAWAISKSKTAAAAIPGPSGLPFMGLLHIFTLSKTPHRALSALSTKFQAHPLMAFSVGLTKFVISSHPDFAKEILNSPSFADRPVKESAYELLFHRAMGFAPYGEYWRNLRRISSTYMFSPKRINAFEGFRREVGEKMISEIEKSIGLKGEVKVKEILHFGSLNNVMMTVFGKSYEFGEMGNNNGDGVELEELVREGYELLGILNWSDHFPILGWLDLQGVRRRCRVLAAKVNLFVGKIIEEHRTKREVEGHQQGDLEHEYDRDFVDVLLDLEKDDKLSDSDMIAVLWEMIFRGTDTVAILLEWILARMVLHPEIQAKAQYEIDSIVGKNPILDSDVPNLPFLQSIVKECLRMHPPGPLLSWARLAVDNVHIGGRLIPAGTTTMVNMWAITHNEKVWREAEKFEPYRFMEEGISVMGSDLRLAPFGAGRRVCPGKAMGLASVHLWLAQLLQAFKWVPSGNSINDGVDLSECLKLSLEMETPLVCKAIPRVG 533
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 40912196 40915021 + Sed0010770.1 Sed03g2560 708047
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2560 533 PANTHER CYTOCHROME P450 78A7-RELATED 21 528 IPR051996 -
Sed03g2560 533 Gene3D Cytochrome P450 47 527 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g2560 533 PRINTS P450 superfamily signature 387 398 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g2560 533 PRINTS P450 superfamily signature 465 474 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g2560 533 PRINTS P450 superfamily signature 474 485 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g2560 533 PRINTS P450 superfamily signature 335 352 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g2560 533 FunFam Cytochrome P450 78A5 49 531 - -
Sed03g2560 533 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 467 476 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed03g2560 533 SUPERFAMILY Cytochrome P450 57 531 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g2560 533 PRINTS E-class P450 group I signature 474 497 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g2560 533 PRINTS E-class P450 group I signature 324 341 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g2560 533 PRINTS E-class P450 group I signature 386 404 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g2560 533 PRINTS E-class P450 group I signature 344 370 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g2560 533 PRINTS E-class P450 group I signature 203 221 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g2560 533 PRINTS E-class P450 group I signature 428 452 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g2560 533 PRINTS E-class P450 group I signature 464 474 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g2560 533 CDD CYP78 91 524 - -
Sed03g2560 533 Pfam Cytochrome P450 58 506 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2286 Sed-Chr1:17299618 Sed03g2560 Sed-Chr3:40912196 1.90E-187 dispersed
Sed03g2560 Sed-Chr3:40912196 Sed08g2131 Sed-Chr8:35279533 1.30E-188 dispersed
Sed03g2555 Sed-Chr3:40605854 Sed03g2560 Sed-Chr3:40912196 4.60E-64 proximal
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2560 K20619 - csv:101221468 784.252