Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed03g2560 | ATGTCATCACCAAACTTCCAAACCCTTCTTCTCCATTTCCCTTCTTCCATTTCCCAAAGCTTCTCTGCCCTTTTCTTAGCTCTTCTTCTCCTCTCCATTTTCTCCTTCTTCCTCCACCCCGGCGGCCAAGCTTGGGCCATTTCCAAGTCCAAGACGGCCGCCGCCGCCATCCCGGGCCCGTCCGGCCTCCCCTTCATGGGCCTCCTCCACATCTTCACTCTCTCAAAAACCCCTCACAGAGCCCTCTCTGCTCTTTCCACCAAATTCCAAGCCCACCCTTTGATGGCCTTTTCTGTGGGCTTAACCAAATTTGTGATCTCAAGCCACCCTGATTTTGCCAAAGAAATTCTCAACAGCCCTTCCTTTGCTGACAGGCCTGTCAAGGAATCTGCCTATGAACTTCTTTTCCACAGAGCAATGGGATTTGCTCCATATGGTGAGTATTGGAGGAACTTGAGAAGGATTTCATCCACTTACATGTTTAGTCCCAAAAGAATAAATGCTTTTGAAGGGTTTAGGAGGGAAGTTGGAGAGAAAATGATAAGTGAAATTGAGAAATCCATTGGTTTGAAAGGGGAGGTGAAGGTTAAGGAGATTCTTCACTTTGGGTCTTTGAATAATGTGATGATGACTGTTTTTGGAAAGAGTTATGAGTTTGGTGAAATGGGGAATAATAATGGTGATGGGGTTGAGCTTGAGGAGTTGGTGAGGGAAGGGTATGAGTTGCTTGGGATTCTCAATTGGAGTGACCATTTTCCAATTTTGGGTTGGTTGGATCTACAAGGTGTGAGGAGAAGGTGTAGGGTTTTGGCTGCTAAAGTGAATTTGTTTGTGGGAAAAATCATTGAGGAGCATAGAACTAAGAGGGAAGTTGAGGGACATCAACAAGGAGATCTAGAACATGAATATGATAGAGACTTTGTTGATGTTCTACTTGATTTGGAGAAAGATGACAAGCTCTCTGATTCTGACATGATTGCTGTTCTTTGGGAAATGATTTTTCGAGGAACTGACACAGTAGCAATACTCTTGGAATGGATTTTGGCACGAATGGTTTTACACCCAGAAATCCAAGCCAAAGCCCAATACGAAATCGATTCAATTGTAGGCAAAAACCCCATATTAGATTCTGATGTCCCAAATCTTCCATTTCTTCAATCAATTGTGAAGGAGTGCTTAAGAATGCACCCACCGGGCCCGCTTTTGTCGTGGGCTCGTCTTGCTGTCGACAACGTGCACATCGGAGGAAGGTTGATACCGGCCGGGACCACAACGATGGTGAACATGTGGGCTATAACGCACAATGAGAAAGTTTGGAGGGAGGCAGAAAAGTTTGAGCCTTATAGGTTCATGGAGGAAGGAATAAGTGTTATGGGAAGTGATTTGAGATTGGCTCCATTTGGGGCAGGGAGAAGGGTTTGCCCTGGAAAAGCAATGGGATTGGCCAGTGTTCATCTTTGGTTGGCTCAGTTACTTCAAGCTTTCAAATGGGTTCCATCTGGAAATAGCATTAATGATGGAGTTGACTTGTCAGAATGCCTTAAACTCTCTTTGGAAATGGAAACACCATTGGTTTGCAAAGCTATTCCTAGGGTTGGTTGA | 1602 | 44.88 | MSSPNFQTLLLHFPSSISQSFSALFLALLLLSIFSFFLHPGGQAWAISKSKTAAAAIPGPSGLPFMGLLHIFTLSKTPHRALSALSTKFQAHPLMAFSVGLTKFVISSHPDFAKEILNSPSFADRPVKESAYELLFHRAMGFAPYGEYWRNLRRISSTYMFSPKRINAFEGFRREVGEKMISEIEKSIGLKGEVKVKEILHFGSLNNVMMTVFGKSYEFGEMGNNNGDGVELEELVREGYELLGILNWSDHFPILGWLDLQGVRRRCRVLAAKVNLFVGKIIEEHRTKREVEGHQQGDLEHEYDRDFVDVLLDLEKDDKLSDSDMIAVLWEMIFRGTDTVAILLEWILARMVLHPEIQAKAQYEIDSIVGKNPILDSDVPNLPFLQSIVKECLRMHPPGPLLSWARLAVDNVHIGGRLIPAGTTTMVNMWAITHNEKVWREAEKFEPYRFMEEGISVMGSDLRLAPFGAGRRVCPGKAMGLASVHLWLAQLLQAFKWVPSGNSINDGVDLSECLKLSLEMETPLVCKAIPRVG | 533 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 40912196 | 40915021 | + | Sed0010770.1 | Sed03g2560 | 708047 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed03g2560 | 533 | PANTHER | CYTOCHROME P450 78A7-RELATED | 21 | 528 | IPR051996 | - | |
| Sed03g2560 | 533 | Gene3D | Cytochrome P450 | 47 | 527 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g2560 | 533 | PRINTS | P450 superfamily signature | 387 | 398 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g2560 | 533 | PRINTS | P450 superfamily signature | 465 | 474 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g2560 | 533 | PRINTS | P450 superfamily signature | 474 | 485 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g2560 | 533 | PRINTS | P450 superfamily signature | 335 | 352 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g2560 | 533 | FunFam | Cytochrome P450 78A5 | 49 | 531 | - | - | |
| Sed03g2560 | 533 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 467 | 476 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed03g2560 | 533 | SUPERFAMILY | Cytochrome P450 | 57 | 531 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g2560 | 533 | PRINTS | E-class P450 group I signature | 474 | 497 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g2560 | 533 | PRINTS | E-class P450 group I signature | 324 | 341 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g2560 | 533 | PRINTS | E-class P450 group I signature | 386 | 404 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g2560 | 533 | PRINTS | E-class P450 group I signature | 344 | 370 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g2560 | 533 | PRINTS | E-class P450 group I signature | 203 | 221 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g2560 | 533 | PRINTS | E-class P450 group I signature | 428 | 452 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g2560 | 533 | PRINTS | E-class P450 group I signature | 464 | 474 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g2560 | 533 | CDD | CYP78 | 91 | 524 | - | - | |
| Sed03g2560 | 533 | Pfam | Cytochrome P450 | 58 | 506 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g2286 | Sed-Chr1:17299618 | Sed03g2560 | Sed-Chr3:40912196 | 1.90E-187 | dispersed | |
| Sed03g2560 | Sed-Chr3:40912196 | Sed08g2131 | Sed-Chr8:35279533 | 1.30E-188 | dispersed | |
| Sed03g2555 | Sed-Chr3:40605854 | Sed03g2560 | Sed-Chr3:40912196 | 4.60E-64 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed03g2560 | K20619 | - | csv:101221468 | 784.252 |