Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2567 ATGGGTCGAAAGAAGTCTACTGCACGGGATGATGACAACACCTCTGCAATAGCTCACGTTGGTGGGAAGTCGAAGAAAAAGACGTTCGCAGTAGACGACGATGAGTACTCGTTTGGAACTGAGTTGTCTGAAGAAGCCCCTTCTCAGGAGGAGAAGGTCGTGATAACTGGGAAAAAGAAGGGTAAGAAGGGCAATTCAGAAGCTTCACAAGTTGAAGAGGAGGAGGATGATGATGGAGATGGTGTTTCCGAAATTGTTATCGCCGAGAGGAAGGGTAAGTCGAAGAAGGGTGGCGGTAGCCGTGCTTTTACTACTTCCAGTTTTGGTTTGCTTGAGGAAGGAGAGGATGGTGTTGATAATGATGATGGTGATGATGAGTCTGTGTTAACTACAGAAAGGGATGACAATGAAGCTGATGATTCTACAATCAAGTTTTTGGGTAAGAAGAAGAAGTCTTCCAAGAAGAGTAGTTTTTCTACCATGTCAACATTTAGTGCCCTTGATGACGAGAAAGATGCAATTGATAATGAGATCAAGGTTGATGAAGAGATCAATGATGAGCCTATTATGGCATTTACAGGTAAGAAGAAGTCATCAAAGGGTGTTAAGAAGAGTGGGAATGCATTTTCAGGTTTTAATGGTCTTGATTATGAGGACGAGGACAGAGGAGATGATAAGGACGAGGAAGAAGATATTGCAATGATTAGTTTCTCTGGTAAGAAAAAGAAGTCAACTAAGGGTTCAAAGAAAAGTGGCAATTCGTATAGTGCAACACTTGCTGATGAGGATAATGATGGTGGTGTTTCTATTCCAGAGCCAAATAAATTAGACAATGATGGTATTGATGAAGACGATGCCAATGCTATTGCATTTTCGGGAAAGAAAAAGTCTTCCAAGAAAAAGAGCAGCACTACTTTTACTGCATTTAGTGATGAACATGTGGTGGACAATGAAGTTAGAGACGTAGTGACGACACCTGAAATACTTAATACAACTAATAGCAATTTTGATTCTGATTTATCGAAAGTTAACAAGATGGAGGGGGTGGTTGAAACTTTGAAAAATAAAAAGAAAAAGAAGAAGAGCGGAAGAACTGCTCAAGAAGAAGATGATTTAGATAAGATTCTTGCTGAGCTAGGGGAAGTGGCTACTATGTCAAAACCAGTGGACCCACCTCTTTCATCACAAGAGGCCAAAGTTAAGAATCCACTCGAGCTTATAGCTTCTCCTGATGCACCAGTTGAAAAGGAAGTTGAAGAAGAGAGCATAGAAACAGCTGCAGCGAGGAAGAAGAAAAAGAAGAAGGAGAAGGAAAAGGAGAAAAAGGCTGCAGCTGCAGCGACAGTAGCATCTGAAGGGAATTATGAGAAGATTGAGGAGGTAAAGAATGAAATTGTAGAACCCAAAAAAGGTGCTGCAAAGAGTAAAGTGCCCGAGAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCAATGGCTAGGAGAAAAGAAGAAGAAGAGAGAAGAAAAAGGGAAGAAGAAGAGAGAGCGAGAAAGGAAGAAGAAGAGAGGCTTAGGCTAGAAGAGCTTGAAAGGCAAGCTGAGGAGGCTAAGCGTAAGAAAAAGGAAAGAGAAAAAGAGAAGCTCCTTAAGAAGAAACTGGAAGGAAAACTGTTAACTGGGAAACAAAAAGAAGAACAACGGAGGTTGGAGGCAATGAGGAACCAGATATTAGCTAGTGCAGGGGGTTTACCTTCGTCTACGTATGATCCCAGTGCACCAACCAAAAGACCCAAATACCAGACAAAGAAGTCAAAACCAGCCCATCATCAAACGAATGGCAATGCCCAAACTAAGGCAGTGGAACAAAAAGAAGAAAAAATGGAAGAAAATGTACCAGAAAAAGGTGAGGCAGAGACTGAAACATTTGAGTCGGGGAAGATTGAATCTGTTGAGTCAATGCACGTAGAGGAAAAAATAGATGTTACTGAGGCTACTGAAGATCATGAAATTCAAGAAGATGAAGATGAAGATGAATGGGATGCAAAGAGTTGGGATGATGCTGTTGTTCATCTTTCCTTAAAAAGTTCCTTTGCTGATGAGGAGCTTGAATCAGAACCTGAGAATGATGTGAAAAAAGATATCAAGAATGGTGTATTAACTTCACGTGATGCAGGCGTCAAGCTTGAAAACAAAAAGAAGCAGCCTGAGGTTGAGGTTGTTGACAAGGGCAAAAGAAAAGATGATGCTGTTGAGAAAGAAACTTCAACATCAGATGCTACTTCCAAACAACAGGAAGAAAATCTTCGCTCACCTATCTGTTGCATTATGGGCCATGTCGATACTGGTAAAACCAAGCTACTGGACTGTATTCGTGGTACAAATGTTCAAGAGGGAGAGGCGGGAGGAATTACTCAGCAGATTGGGGCAACATATTTTCCTGCTGAGAACATTCGTGAAAGAACAAGAGAACTGAAAGCTGATGCAAAGCTGAAGGTTCCGGGCCTACTTATTATCGATACCCCTGGGCACGAATCGTTTACAAACTTACGTTCTCGTGGTTCAGGTTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCTTAGAACCACAAACGATAGAATCTCTTAATCTCTTGAGGATGAGAAACACCGAATTTATTGTAGCTCTGAATAAGGTTGATAGACTTTATGGGTGGAAAACCATCCGCAATGCACCAATACTTAAGACAATGAAGCAGCAATCCAAGGATGTACAGAATGAGTTCAATAGGAGGCTTATTCAGATTATCACTCAATTTAAAGAGCAGGGATTGAATACTGAGCTGTACTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTAACTGGTGAAGGTATTCCAGACATGTTATTATTATTGGTGCAGTGGGCCCAGAAAACCATGACGCAGAAACTTACATATAGTGATGAAGTGCAGTGCACGGTCTTGGAGGTCAAGGTTGTTGAAGGGCATGGAACAACTATTGATGTCATATTGGTTAATGGTGTGCTGCATGAAGGAGATCAAATAGTTGTGTGCGGCATGCAGGGTCCTATTGTTACTACCATTCGTGCCCTATTGACGCCCCATCCAATGAAGGAACTCCGAGTAAAGGGAACATATCTGCATCATAAGAAAATCAAGGCTGCTCAGGGAATAAAAATAACTGGACAGGGTCTAGAGCATGCTATTGCTGGAACCAGTCTTCACGTGGTAGGTCCCGAGGATGACTTGGAAGACATTAAGGATTCGGCTATGGAAGATATGAAGTCAGTCATGAGCAGGATAGACAGGACTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTTGGTTCCTTGGAAGCATTGTTAGAGTTTTTGAAGTCCCCGGCCGTGAGCATTCCTGTTAGTGGAATAAGTATCGGGCCCGTTCATAAAAAAGATGTCATGAAAGCTAGTGTAATGCTTGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTAACTCCAGAAGCTCGAGAACTTGCCGAGGAGCTTGGTGTGAAGATTTTTATTGCTGATATCATTTATCACTTGTTCGACCAATTCAAGGCCTATATTGATAATCTTAAAGAGGAAAAGAAGAAAGAAGCCGCTGAGGAAGCAGTCTTTCCTTGTGTTCTAAAAATTTTACCAAATTGCGTTTTCAACAAGAAGGATCCAATTGTGTTGGGGGTCGATGTAATTGAAGGCATTGCCAAGGTTGGCACACCAATTTGTATTCCTACAAGAGAATTTATTGACATTGGTCGCATTGCATCAATTGAAAGTAATCACAAACCTGTTGATTATGCAAAGAAAGGGCAGACGATTGCCATTAAGATAGTTGGGCACTCTTCGGAGGAGCAGCAAAAGATGTATGGTAGGCATTTTGACTTGGAGGATGAACTTGTCAGCCATATATCAAGGAAGTCCATTGACCTACTCAAAGCCAATTATCGGGATGATTTGTCGACGGAGGAGTGGAGGCTGGTGGTGAAAATGAAGAACCTTTTCAAGATACAATGA 4068 41.47 MGRKKSTARDDDNTSAIAHVGGKSKKKTFAVDDDEYSFGTELSEEAPSQEEKVVITGKKKGKKGNSEASQVEEEEDDDGDGVSEIVIAERKGKSKKGGGSRAFTTSSFGLLEEGEDGVDNDDGDDESVLTTERDDNEADDSTIKFLGKKKKSSKKSSFSTMSTFSALDDEKDAIDNEIKVDEEINDEPIMAFTGKKKSSKGVKKSGNAFSGFNGLDYEDEDRGDDKDEEEDIAMISFSGKKKKSTKGSKKSGNSYSATLADEDNDGGVSIPEPNKLDNDGIDEDDANAIAFSGKKKSSKKKSSTTFTAFSDEHVVDNEVRDVVTTPEILNTTNSNFDSDLSKVNKMEGVVETLKNKKKKKKSGRTAQEEDDLDKILAELGEVATMSKPVDPPLSSQEAKVKNPLELIASPDAPVEKEVEEESIETAAARKKKKKKEKEKEKKAAAAATVASEGNYEKIEEVKNEIVEPKKGAAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERARKEEEERLRLEELERQAEEAKRKKKEREKEKLLKKKLEGKLLTGKQKEEQRRLEAMRNQILASAGGLPSSTYDPSAPTKRPKYQTKKSKPAHHQTNGNAQTKAVEQKEEKMEENVPEKGEAETETFESGKIESVESMHVEEKIDVTEATEDHEIQEDEDEDEWDAKSWDDAVVHLSLKSSFADEELESEPENDVKKDIKNGVLTSRDAGVKLENKKKQPEVEVVDKGKRKDDAVEKETSTSDATSKQQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKTIRNAPILKTMKQQSKDVQNEFNRRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDMLLLLVQWAQKTMTQKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKKIKAAQGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVMSRIDRTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCVFNKKDPIVLGVDVIEGIAKVGTPICIPTREFIDIGRIASIESNHKPVDYAKKGQTIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSTEEWRLVVKMKNLFKIQ 1355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 41044181 41056695 - Sed0012093.1 Sed03g2567 708054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2567 1355 Coils Coil 1200 1220 - -
Sed03g2567 1355 Gene3D Translation factors 986 1104 - -
Sed03g2567 1355 MobiDBLite consensus disorder prediction 426 450 - -
Sed03g2567 1355 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 763 979 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed03g2567 1355 Pfam Elongation factor Tu GTP binding domain 766 975 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed03g2567 1355 MobiDBLite consensus disorder prediction 614 660 - -
Sed03g2567 1355 Pfam Elongation factor Tu domain 4 1225 1298 IPR029459 -
Sed03g2567 1355 MobiDBLite consensus disorder prediction 38 283 - -
Sed03g2567 1355 Gene3D - 756 985 IPR027417 -
Sed03g2567 1355 MobiDBLite consensus disorder prediction 114 133 - -
Sed03g2567 1355 SUPERFAMILY Translation proteins 1222 1354 IPR009000 -
Sed03g2567 1355 Coils Coil 482 551 - -
Sed03g2567 1355 MobiDBLite consensus disorder prediction 465 679 - -
Sed03g2567 1355 CDD IF2_aeIF5B_IV 1226 1321 - -
Sed03g2567 1355 CDD aeIF5B_II 987 1097 - -
Sed03g2567 1355 PRINTS GTP-binding elongation factor signature 767 780 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed03g2567 1355 PRINTS GTP-binding elongation factor signature 831 841 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed03g2567 1355 PRINTS GTP-binding elongation factor signature 883 892 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed03g2567 1355 PRINTS GTP-binding elongation factor signature 847 858 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed03g2567 1355 MobiDBLite consensus disorder prediction 168 190 - -
Sed03g2567 1355 MobiDBLite consensus disorder prediction 1 25 - -
Sed03g2567 1355 FunFam Eukaryotic translation initiation factor 5B 1218 1355 - -
Sed03g2567 1355 FunFam eukaryotic translation initiation factor 5B 986 1105 - -
Sed03g2567 1355 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 419 1354 IPR015760 GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0006413(PANTHER)
Sed03g2567 1355 FunFam Eukaryotic translation initiation factor 5B 1105 1211 - -
Sed03g2567 1355 CDD IF2_eIF5B 766 976 - -
Sed03g2567 1355 Gene3D Translation factors 1218 1355 - -
Sed03g2567 1355 MobiDBLite consensus disorder prediction 720 754 - -
Sed03g2567 1355 FunFam Eukaryotic translation initiation factor 5B 757 985 - -
Sed03g2567 1355 NCBIfam small GTP-binding protein domain 768 893 IPR005225 GO:0005525(InterPro)
Sed03g2567 1355 Pfam Translation-initiation factor 2 1092 1204 IPR023115 -
Sed03g2567 1355 MobiDBLite consensus disorder prediction 574 589 - -
Sed03g2567 1355 MobiDBLite consensus disorder prediction 465 566 - -
Sed03g2567 1355 Coils Coil 416 447 - -
Sed03g2567 1355 Gene3D - 1105 1211 IPR036925 -
Sed03g2567 1355 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1088 1217 IPR036925 -
Sed03g2567 1355 MobiDBLite consensus disorder prediction 661 677 - -
Sed03g2567 1355 MobiDBLite consensus disorder prediction 720 761 - -
Sed03g2567 1355 MobiDBLite consensus disorder prediction 45 69 - -
Sed03g2567 1355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 757 1054 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2567 Sed-Chr3:41044181 Sed10g0612 Sed-Chr10:4045105 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2567 K03243 - csv:101204360 1410.2