Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g2567 | ATGGGTCGAAAGAAGTCTACTGCACGGGATGATGACAACACCTCTGCAATAGCTCACGTTGGTGGGAAGTCGAAGAAAAAGACGTTCGCAGTAGACGACGATGAGTACTCGTTTGGAACTGAGTTGTCTGAAGAAGCCCCTTCTCAGGAGGAGAAGGTCGTGATAACTGGGAAAAAGAAGGGTAAGAAGGGCAATTCAGAAGCTTCACAAGTTGAAGAGGAGGAGGATGATGATGGAGATGGTGTTTCCGAAATTGTTATCGCCGAGAGGAAGGGTAAGTCGAAGAAGGGTGGCGGTAGCCGTGCTTTTACTACTTCCAGTTTTGGTTTGCTTGAGGAAGGAGAGGATGGTGTTGATAATGATGATGGTGATGATGAGTCTGTGTTAACTACAGAAAGGGATGACAATGAAGCTGATGATTCTACAATCAAGTTTTTGGGTAAGAAGAAGAAGTCTTCCAAGAAGAGTAGTTTTTCTACCATGTCAACATTTAGTGCCCTTGATGACGAGAAAGATGCAATTGATAATGAGATCAAGGTTGATGAAGAGATCAATGATGAGCCTATTATGGCATTTACAGGTAAGAAGAAGTCATCAAAGGGTGTTAAGAAGAGTGGGAATGCATTTTCAGGTTTTAATGGTCTTGATTATGAGGACGAGGACAGAGGAGATGATAAGGACGAGGAAGAAGATATTGCAATGATTAGTTTCTCTGGTAAGAAAAAGAAGTCAACTAAGGGTTCAAAGAAAAGTGGCAATTCGTATAGTGCAACACTTGCTGATGAGGATAATGATGGTGGTGTTTCTATTCCAGAGCCAAATAAATTAGACAATGATGGTATTGATGAAGACGATGCCAATGCTATTGCATTTTCGGGAAAGAAAAAGTCTTCCAAGAAAAAGAGCAGCACTACTTTTACTGCATTTAGTGATGAACATGTGGTGGACAATGAAGTTAGAGACGTAGTGACGACACCTGAAATACTTAATACAACTAATAGCAATTTTGATTCTGATTTATCGAAAGTTAACAAGATGGAGGGGGTGGTTGAAACTTTGAAAAATAAAAAGAAAAAGAAGAAGAGCGGAAGAACTGCTCAAGAAGAAGATGATTTAGATAAGATTCTTGCTGAGCTAGGGGAAGTGGCTACTATGTCAAAACCAGTGGACCCACCTCTTTCATCACAAGAGGCCAAAGTTAAGAATCCACTCGAGCTTATAGCTTCTCCTGATGCACCAGTTGAAAAGGAAGTTGAAGAAGAGAGCATAGAAACAGCTGCAGCGAGGAAGAAGAAAAAGAAGAAGGAGAAGGAAAAGGAGAAAAAGGCTGCAGCTGCAGCGACAGTAGCATCTGAAGGGAATTATGAGAAGATTGAGGAGGTAAAGAATGAAATTGTAGAACCCAAAAAAGGTGCTGCAAAGAGTAAAGTGCCCGAGAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCAATGGCTAGGAGAAAAGAAGAAGAAGAGAGAAGAAAAAGGGAAGAAGAAGAGAGAGCGAGAAAGGAAGAAGAAGAGAGGCTTAGGCTAGAAGAGCTTGAAAGGCAAGCTGAGGAGGCTAAGCGTAAGAAAAAGGAAAGAGAAAAAGAGAAGCTCCTTAAGAAGAAACTGGAAGGAAAACTGTTAACTGGGAAACAAAAAGAAGAACAACGGAGGTTGGAGGCAATGAGGAACCAGATATTAGCTAGTGCAGGGGGTTTACCTTCGTCTACGTATGATCCCAGTGCACCAACCAAAAGACCCAAATACCAGACAAAGAAGTCAAAACCAGCCCATCATCAAACGAATGGCAATGCCCAAACTAAGGCAGTGGAACAAAAAGAAGAAAAAATGGAAGAAAATGTACCAGAAAAAGGTGAGGCAGAGACTGAAACATTTGAGTCGGGGAAGATTGAATCTGTTGAGTCAATGCACGTAGAGGAAAAAATAGATGTTACTGAGGCTACTGAAGATCATGAAATTCAAGAAGATGAAGATGAAGATGAATGGGATGCAAAGAGTTGGGATGATGCTGTTGTTCATCTTTCCTTAAAAAGTTCCTTTGCTGATGAGGAGCTTGAATCAGAACCTGAGAATGATGTGAAAAAAGATATCAAGAATGGTGTATTAACTTCACGTGATGCAGGCGTCAAGCTTGAAAACAAAAAGAAGCAGCCTGAGGTTGAGGTTGTTGACAAGGGCAAAAGAAAAGATGATGCTGTTGAGAAAGAAACTTCAACATCAGATGCTACTTCCAAACAACAGGAAGAAAATCTTCGCTCACCTATCTGTTGCATTATGGGCCATGTCGATACTGGTAAAACCAAGCTACTGGACTGTATTCGTGGTACAAATGTTCAAGAGGGAGAGGCGGGAGGAATTACTCAGCAGATTGGGGCAACATATTTTCCTGCTGAGAACATTCGTGAAAGAACAAGAGAACTGAAAGCTGATGCAAAGCTGAAGGTTCCGGGCCTACTTATTATCGATACCCCTGGGCACGAATCGTTTACAAACTTACGTTCTCGTGGTTCAGGTTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCTTAGAACCACAAACGATAGAATCTCTTAATCTCTTGAGGATGAGAAACACCGAATTTATTGTAGCTCTGAATAAGGTTGATAGACTTTATGGGTGGAAAACCATCCGCAATGCACCAATACTTAAGACAATGAAGCAGCAATCCAAGGATGTACAGAATGAGTTCAATAGGAGGCTTATTCAGATTATCACTCAATTTAAAGAGCAGGGATTGAATACTGAGCTGTACTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTAACTGGTGAAGGTATTCCAGACATGTTATTATTATTGGTGCAGTGGGCCCAGAAAACCATGACGCAGAAACTTACATATAGTGATGAAGTGCAGTGCACGGTCTTGGAGGTCAAGGTTGTTGAAGGGCATGGAACAACTATTGATGTCATATTGGTTAATGGTGTGCTGCATGAAGGAGATCAAATAGTTGTGTGCGGCATGCAGGGTCCTATTGTTACTACCATTCGTGCCCTATTGACGCCCCATCCAATGAAGGAACTCCGAGTAAAGGGAACATATCTGCATCATAAGAAAATCAAGGCTGCTCAGGGAATAAAAATAACTGGACAGGGTCTAGAGCATGCTATTGCTGGAACCAGTCTTCACGTGGTAGGTCCCGAGGATGACTTGGAAGACATTAAGGATTCGGCTATGGAAGATATGAAGTCAGTCATGAGCAGGATAGACAGGACTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTTGGTTCCTTGGAAGCATTGTTAGAGTTTTTGAAGTCCCCGGCCGTGAGCATTCCTGTTAGTGGAATAAGTATCGGGCCCGTTCATAAAAAAGATGTCATGAAAGCTAGTGTAATGCTTGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTAACTCCAGAAGCTCGAGAACTTGCCGAGGAGCTTGGTGTGAAGATTTTTATTGCTGATATCATTTATCACTTGTTCGACCAATTCAAGGCCTATATTGATAATCTTAAAGAGGAAAAGAAGAAAGAAGCCGCTGAGGAAGCAGTCTTTCCTTGTGTTCTAAAAATTTTACCAAATTGCGTTTTCAACAAGAAGGATCCAATTGTGTTGGGGGTCGATGTAATTGAAGGCATTGCCAAGGTTGGCACACCAATTTGTATTCCTACAAGAGAATTTATTGACATTGGTCGCATTGCATCAATTGAAAGTAATCACAAACCTGTTGATTATGCAAAGAAAGGGCAGACGATTGCCATTAAGATAGTTGGGCACTCTTCGGAGGAGCAGCAAAAGATGTATGGTAGGCATTTTGACTTGGAGGATGAACTTGTCAGCCATATATCAAGGAAGTCCATTGACCTACTCAAAGCCAATTATCGGGATGATTTGTCGACGGAGGAGTGGAGGCTGGTGGTGAAAATGAAGAACCTTTTCAAGATACAATGA | 4068 | 41.47 | MGRKKSTARDDDNTSAIAHVGGKSKKKTFAVDDDEYSFGTELSEEAPSQEEKVVITGKKKGKKGNSEASQVEEEEDDDGDGVSEIVIAERKGKSKKGGGSRAFTTSSFGLLEEGEDGVDNDDGDDESVLTTERDDNEADDSTIKFLGKKKKSSKKSSFSTMSTFSALDDEKDAIDNEIKVDEEINDEPIMAFTGKKKSSKGVKKSGNAFSGFNGLDYEDEDRGDDKDEEEDIAMISFSGKKKKSTKGSKKSGNSYSATLADEDNDGGVSIPEPNKLDNDGIDEDDANAIAFSGKKKSSKKKSSTTFTAFSDEHVVDNEVRDVVTTPEILNTTNSNFDSDLSKVNKMEGVVETLKNKKKKKKSGRTAQEEDDLDKILAELGEVATMSKPVDPPLSSQEAKVKNPLELIASPDAPVEKEVEEESIETAAARKKKKKKEKEKEKKAAAAATVASEGNYEKIEEVKNEIVEPKKGAAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERARKEEEERLRLEELERQAEEAKRKKKEREKEKLLKKKLEGKLLTGKQKEEQRRLEAMRNQILASAGGLPSSTYDPSAPTKRPKYQTKKSKPAHHQTNGNAQTKAVEQKEEKMEENVPEKGEAETETFESGKIESVESMHVEEKIDVTEATEDHEIQEDEDEDEWDAKSWDDAVVHLSLKSSFADEELESEPENDVKKDIKNGVLTSRDAGVKLENKKKQPEVEVVDKGKRKDDAVEKETSTSDATSKQQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKTIRNAPILKTMKQQSKDVQNEFNRRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDMLLLLVQWAQKTMTQKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKKIKAAQGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVMSRIDRTGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELAEELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCVFNKKDPIVLGVDVIEGIAKVGTPICIPTREFIDIGRIASIESNHKPVDYAKKGQTIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSTEEWRLVVKMKNLFKIQ | 1355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 41044181 | 41056695 | - | Sed0012093.1 | Sed03g2567 | 708054 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g2567 | 1355 | Coils | Coil | 1200 | 1220 | - | - | |
Sed03g2567 | 1355 | Gene3D | Translation factors | 986 | 1104 | - | - | |
Sed03g2567 | 1355 | MobiDBLite | consensus disorder prediction | 426 | 450 | - | - | |
Sed03g2567 | 1355 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 763 | 979 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed03g2567 | 1355 | Pfam | Elongation factor Tu GTP binding domain | 766 | 975 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed03g2567 | 1355 | MobiDBLite | consensus disorder prediction | 614 | 660 | - | - | |
Sed03g2567 | 1355 | Pfam | Elongation factor Tu domain 4 | 1225 | 1298 | IPR029459 | - | |
Sed03g2567 | 1355 | MobiDBLite | consensus disorder prediction | 38 | 283 | - | - | |
Sed03g2567 | 1355 | Gene3D | - | 756 | 985 | IPR027417 | - | |
Sed03g2567 | 1355 | MobiDBLite | consensus disorder prediction | 114 | 133 | - | - | |
Sed03g2567 | 1355 | SUPERFAMILY | Translation proteins | 1222 | 1354 | IPR009000 | - | |
Sed03g2567 | 1355 | Coils | Coil | 482 | 551 | - | - | |
Sed03g2567 | 1355 | MobiDBLite | consensus disorder prediction | 465 | 679 | - | - | |
Sed03g2567 | 1355 | CDD | IF2_aeIF5B_IV | 1226 | 1321 | - | - | |
Sed03g2567 | 1355 | CDD | aeIF5B_II | 987 | 1097 | - | - | |
Sed03g2567 | 1355 | PRINTS | GTP-binding elongation factor signature | 767 | 780 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed03g2567 | 1355 | PRINTS | GTP-binding elongation factor signature | 831 | 841 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed03g2567 | 1355 | PRINTS | GTP-binding elongation factor signature | 883 | 892 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed03g2567 | 1355 | PRINTS | GTP-binding elongation factor signature | 847 | 858 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed03g2567 | 1355 | MobiDBLite | consensus disorder prediction | 168 | 190 | - | - | |
Sed03g2567 | 1355 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Sed03g2567 | 1355 | FunFam | Eukaryotic translation initiation factor 5B | 1218 | 1355 | - | - | |
Sed03g2567 | 1355 | FunFam | eukaryotic translation initiation factor 5B | 986 | 1105 | - | - | |
Sed03g2567 | 1355 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 419 | 1354 | IPR015760 | GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0006413(PANTHER) | |
Sed03g2567 | 1355 | FunFam | Eukaryotic translation initiation factor 5B | 1105 | 1211 | - | - | |
Sed03g2567 | 1355 | CDD | IF2_eIF5B | 766 | 976 | - | - | |
Sed03g2567 | 1355 | Gene3D | Translation factors | 1218 | 1355 | - | - | |
Sed03g2567 | 1355 | MobiDBLite | consensus disorder prediction | 720 | 754 | - | - | |
Sed03g2567 | 1355 | FunFam | Eukaryotic translation initiation factor 5B | 757 | 985 | - | - | |
Sed03g2567 | 1355 | NCBIfam | small GTP-binding protein domain | 768 | 893 | IPR005225 | GO:0005525(InterPro) | |
Sed03g2567 | 1355 | Pfam | Translation-initiation factor 2 | 1092 | 1204 | IPR023115 | - | |
Sed03g2567 | 1355 | MobiDBLite | consensus disorder prediction | 574 | 589 | - | - | |
Sed03g2567 | 1355 | MobiDBLite | consensus disorder prediction | 465 | 566 | - | - | |
Sed03g2567 | 1355 | Coils | Coil | 416 | 447 | - | - | |
Sed03g2567 | 1355 | Gene3D | - | 1105 | 1211 | IPR036925 | - | |
Sed03g2567 | 1355 | SUPERFAMILY | Initiation factor IF2/eIF5b, domain 3 | 1088 | 1217 | IPR036925 | - | |
Sed03g2567 | 1355 | MobiDBLite | consensus disorder prediction | 661 | 677 | - | - | |
Sed03g2567 | 1355 | MobiDBLite | consensus disorder prediction | 720 | 761 | - | - | |
Sed03g2567 | 1355 | MobiDBLite | consensus disorder prediction | 45 | 69 | - | - | |
Sed03g2567 | 1355 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 757 | 1054 | IPR027417 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2567 | Sed-Chr3:41044181 | Sed10g0612 | Sed-Chr10:4045105 | 0.00E+00 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g2567 | K03243 | - | csv:101204360 | 1410.2 |