Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2573 ATGGACGCTTCAAGAGGGGTAAAGAAGAGAGGCCATGGAAATCGTTCTTGGATAAAAATTGATCAAGAAGGGAACTCAGAGGTGTTGGAACTTGAGAAGGCTACTATAATGAGGCATTGTTCTTTACCTTCAAGAGATATGAGACTTCTAGATCCTCTCTTCCTTTGTCCATCCACAATTCTTGGAAGGGAGAAGGCAATTGTTGTCAGTCTCGAGCAAATTCGGTGCATAATCACGTCTGATGAGGTTATTTTAATGAACTCCTTGGATGGATGTGCCGCACAGTACAAGTCAGAACTATGCAAACGTCTCCAGGGAAGTAAAGATCAGTCAGATGATTTACCCTTTGAATTTCGGGCACTAGAACTGGCACTGGAACTTACTTGCTCCATTCTTGACACTCAGGTAAAAGGGATGGAAATGGAGATATACCCTCTACTGGATGATTTAGCATCGTCAATAAACACCCTTAATCTTGAAAGAGTTCGAAGATTTAAAGGCAACCTTCTGATGATGACTCAACAAGTGCAAAAGGTGCGTGATGAAATTGAGCATTTGATGGACGATGATGGGGATATGGCTGAGATGTATCTGACAGAGAAGAAACAAAGATTAGAGGCTAACATCCGAAGTAACTTGTATCTCGAAACTAGTTTCTTTGGGAAACAGCTACCAAAATCGGCTCCCGTTTCGCCCGTGGGTTCTACCAATGGATCTCATAAATTACAAAGGGCTTTTAGCAGTATTGTAAACTCAAGCAGCTTGATGGGTTCATCGAACGATGGTGATAACATCGAACAATTGGAGATGCTGCTCGAGGCATACTTCGTGGTCATTGACGACATGCTCAGTAAATTGCTGTCGCTCAAAGAATCTATAGATGATACAGAAGATCTGATCAACATTAAACTGGGAAACGTTCAGAACCAGCTGATACAATTTCAGCTACTTTTTACTGCAGCTACATTCTTGGCTACGATGTTTGCTGCGTTAACTGCAGTTTTCGGAATGAATTTTGTCGATGATGTCTTCGACCATCCAGCTTCTTTCCAGTGGATTGTGTACTTTACCTTGATTGGCTGTTGCATTGTGTATCTCTCTTTTCTATTATATTTTAGGTACAAGAAAATCTTCCCATTGTAA 1143 41.21 MDASRGVKKRGHGNRSWIKIDQEGNSEVLELEKATIMRHCSLPSRDMRLLDPLFLCPSTILGREKAIVVSLEQIRCIITSDEVILMNSLDGCAAQYKSELCKRLQGSKDQSDDLPFEFRALELALELTCSILDTQVKGMEMEIYPLLDDLASSINTLNLERVRRFKGNLLMMTQQVQKVRDEIEHLMDDDGDMAEMYLTEKKQRLEANIRSNLYLETSFFGKQLPKSAPVSPVGSTNGSHKLQRAFSSIVNSSSLMGSSNDGDNIEQLEMLLEAYFVVIDDMLSKLLSLKESIDDTEDLINIKLGNVQNQLIQFQLLFTAATFLATMFAALTAVFGMNFVDDVFDHPASFQWIVYFTLIGCCIVYLSFLLYFRYKKIFPL 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 41095198 41125178 - Sed0007156.1 Sed03g2573 708060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2573 380 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 5 377 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Sed03g2573 380 Coils Coil 169 189 - -
Sed03g2573 380 Pfam Magnesium transporter MRS2-like 20 206 - -
Sed03g2573 380 Gene3D Magnesium transport protein CorA, transmembrane region 91 311 - -
Sed03g2573 380 FunFam Magnesium transporter MRS2-1 5 88 - -
Sed03g2573 380 CDD Mrs2_Mfm1p-like 17 377 IPR039204 -
Sed03g2573 380 Gene3D - 3 88 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2573 Sed-Chr3:41095198 Sed06g2048 Sed-Chr6:44545785 2.00E-106 dispersed
Sed03g2573 Sed-Chr3:41095198 Sed05g1392 Sed-Chr5:26967057 4.80E-108 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2573 K16075 - csv:101220835 657.521