Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2583 ATGGACTCCGACGATCCTTCCCCCAACTTCTCCGCCGCCGGTGATCGGACCCACTCCTCCCTCCACGCTCCTAACCTCTTCTTCTCCGCCGACCAATCCTCCATCCTCTCTCACTTCGGATGGAACCTCCCCTCCGATCACTACGACACCGCCGCCGGATCGCAGTCCCCTACGCCTTCTGCTCCGCCACCCTCTTCCAGCTCCAGCGCTGGAGACCCACCCCACAAACATACTCTGCGGAATAAGGTAAAAAAGAAGGGCGGACTAAAGCGAATTCGGCAGCCACGATTTGCATTCATGACTAAAAGTGAAGTTGATCATCTTGAAGATGGCTACCGCTGGAGGAAATATGGACAAAAGGCTGTCAAGAATAGTCCCTTTCCTAGGAGTTACTATAGGTGCACAAACAGCAAATGCATAGTGAAGAAAAGGGTAGAACGGTCGAGTGAAGATCCAACGGTTGTGATCACGACTTATGAAGGGCAACACTGTCATCACAGCGTTGGATTCCCACGGGGTGGAGTGAAGATGGCGCATGAAGCTGGTATGTTCGGGACGCAATTTTCAGGTCAAATGAGACAGTTTTATTACCCGGATGATCAGGTCACAGCGCCCATGAATAACCCTCCACCAAATGCACCATCCGAACCAACAAGTCGAGTGCCCGTGGCTTCGGATGAAGGCTTACTTGCCGATATTGTGCCCCCAAGCATGCTTAGAAAGGTGACCCACTAG 735 52.52 MDSDDPSPNFSAAGDRTHSSLHAPNLFFSADQSSILSHFGWNLPSDHYDTAAGSQSPTPSAPPPSSSSSAGDPPHKHTLRNKVKKKGGLKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCIVKKRVERSSEDPTVVITTYEGQHCHHSVGFPRGGVKMAHEAGMFGTQFSGQMRQFYYPDDQVTAPMNNPPPNAPSEPTSRVPVASDEGLLADIVPPSMLRKVTH 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 41279511 41283768 + Sed0001351.1 Sed03g2583 708070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2583 244 FunFam WRKY transcription factor 57 94 168 - -
Sed03g2583 244 SUPERFAMILY WRKY DNA-binding domain 100 166 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g2583 244 SMART WRKY_cls 108 167 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g2583 244 ProSiteProfiles WRKY domain profile. 103 168 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g2583 244 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 57 182 IPR044810 GO:0003700(InterPro)
Sed03g2583 244 MobiDBLite consensus disorder prediction 200 222 - -
Sed03g2583 244 MobiDBLite consensus disorder prediction 47 90 - -
Sed03g2583 244 Pfam WRKY DNA -binding domain 109 165 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g2583 244 Gene3D WRKY domain 95 161 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2583 Sed-Chr3:41279511 Sed05g1272 Sed-Chr5:23853056 2.40E-36 dispersed
Sed03g2583 Sed-Chr3:41279511 Sed05g1863 Sed-Chr5:32047521 3.80E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37944 PF03106 WRKY 3.90E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2583 - - - 0.0