Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g2599 | ATGGACGATGGAGGAGCTTCTCTGCCGGACGACACCGTCATGTCTGAGGCGGCGGCTGTTCCGCCGCAGCACCAGCCGCCGCCGGTGGGGATGGAAAACATTCCGGCCACTTTGAGCCATGGAGGGAGATTCATTCAGTACAACATCTTTGGGAACATTTTCGAAGTTACGGCCAAGTACAAGCCTCCCATCATGCCTATTGGCAAAGGCGCTTACGGCATCGTCTGTTCTGCTCTCAACTCTGAGACAAGCGAGCACGTTGCGATCAAAAAGATTGCTAATGCGTTTGACAACAAGATCGATGCTAAGAGAACCCTTCGTGAGATCAAGCTCCTTCGGCACATGGATCATGAAAACGTTGTTGCAATTAGGGATATAATACCTCCGCCTCTAAGGGAAACATTTAATGATGTTTACATAGCATATGAGCTAATGGATACTGACCTTCATCAAATAATTCGGTCAAACCAAGGATTATCAGAGGAGCATTGTCAGTACTTCCTGTACCAGATTCTTCGTGGATTGAAGTACATACATTCAGCAAATGTTCTGCACAGAGATTTGAAGCCTTCCAATCTGCTATTAAATGCCAATTGTGACCTGAAAATATGTGATTTTGGACTTGCTCGTGTTACTTCTGAAACCGACTTTATGACAGAATATGTGGTTACAAGGTGGTACCGTGCACCGGAACTCTTACTTAATTCATCTGATTACACAGCAGCTATTGATGTCTGGTCTGTTGGTTGTATTTTTATGGAACTGATGGATCGGAAGCCCTTGTTTCCTGGTCGGGATCATGTTCATCAGTTACGCTTGCTTTTGGAGTTGATTGGCACTCCATCCGAGGCTGATCTTGGGTTTTTGAATGAAAATGCTAAGCGATACATACGGCAACTTCCTCTTTACCATCGGCAGTCATTCACTGAAAAATTCCCACATGTCCATCCTGCAGCCATTGATCTGGTGGAGAAGATGCTAACATTTGATCCAGGACAGAGACTTACCGTTGAAGATGCTCTGGCTCATCCTTATTTGACTTCATTGCATGACATTAGTGACGAGCCTGTCTGCATGACACCCTTCAGCTTCGATTTCGAGCAGCATGCGCTTACTGAGGAACAGATGAAAGAGCTGATCCATCTAGAGGCACTCGCATTTAACCCAGAGTACCATCACCAATAA | 1185 | 45.57 | MDDGGASLPDDTVMSEAAAVPPQHQPPPVGMENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETSEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIIPPPLRETFNDVYIAYELMDTDLHQIIRSNQGLSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLLELIGTPSEADLGFLNENAKRYIRQLPLYHRQSFTEKFPHVHPAAIDLVEKMLTFDPGQRLTVEDALAHPYLTSLHDISDEPVCMTPFSFDFEQHALTEEQMKELIHLEALAFNPEYHHQ | 394 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 41777046 | 41790506 | - | Sed0005909.1 | Sed03g2599 | 708086 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g2599 | 394 | Gene3D | Transferase(Phosphotransferase) domain 1 | 145 | 373 | - | - | |
Sed03g2599 | 394 | FunFam | Mitogen-activated protein kinase | 46 | 155 | - | - | |
Sed03g2599 | 394 | ProSitePatterns | Protein kinases ATP-binding region signature. | 67 | 91 | IPR017441 | GO:0005524(InterPro) | |
Sed03g2599 | 394 | CDD | STKc_TEY_MAPK | 54 | 389 | - | - | |
Sed03g2599 | 394 | ProSiteProfiles | Protein kinase domain profile. | 61 | 346 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed03g2599 | 394 | SMART | serkin_6 | 61 | 346 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed03g2599 | 394 | SUPERFAMILY | Protein kinase-like (PK-like) | 66 | 354 | IPR011009 | - | |
Sed03g2599 | 394 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 54 | 379 | IPR050117 | GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER) | |
Sed03g2599 | 394 | Gene3D | Phosphorylase Kinase; domain 1 | 44 | 381 | - | - | |
Sed03g2599 | 394 | ProSitePatterns | MAP kinase signature. | 96 | 199 | IPR003527 | GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed03g2599 | 394 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 183 | 195 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed03g2599 | 394 | FunFam | Mitogen-activated protein kinase | 145 | 373 | - | - | |
Sed03g2599 | 394 | Pfam | Protein kinase domain | 66 | 346 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2599 | Sed-Chr3:41777046 | Sed05g0755 | Sed-Chr5:5911782 | 1.50E-160 | dispersed | |
Sed14g1516 | Sed-Chr14:23465468 | Sed03g2599 | Sed-Chr3:41777046 | 4.30E-40 | dispersed | |
Sed03g2599 | Sed-Chr3:41777046 | Sed04g0107 | Sed-Chr4:649301 | 4.00E-222 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78937 | PF00069 | Pkinase | 8.90E-73 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g2599 | K14512 | - | csv:101204301 | 779.63 |