Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2599 ATGGACGATGGAGGAGCTTCTCTGCCGGACGACACCGTCATGTCTGAGGCGGCGGCTGTTCCGCCGCAGCACCAGCCGCCGCCGGTGGGGATGGAAAACATTCCGGCCACTTTGAGCCATGGAGGGAGATTCATTCAGTACAACATCTTTGGGAACATTTTCGAAGTTACGGCCAAGTACAAGCCTCCCATCATGCCTATTGGCAAAGGCGCTTACGGCATCGTCTGTTCTGCTCTCAACTCTGAGACAAGCGAGCACGTTGCGATCAAAAAGATTGCTAATGCGTTTGACAACAAGATCGATGCTAAGAGAACCCTTCGTGAGATCAAGCTCCTTCGGCACATGGATCATGAAAACGTTGTTGCAATTAGGGATATAATACCTCCGCCTCTAAGGGAAACATTTAATGATGTTTACATAGCATATGAGCTAATGGATACTGACCTTCATCAAATAATTCGGTCAAACCAAGGATTATCAGAGGAGCATTGTCAGTACTTCCTGTACCAGATTCTTCGTGGATTGAAGTACATACATTCAGCAAATGTTCTGCACAGAGATTTGAAGCCTTCCAATCTGCTATTAAATGCCAATTGTGACCTGAAAATATGTGATTTTGGACTTGCTCGTGTTACTTCTGAAACCGACTTTATGACAGAATATGTGGTTACAAGGTGGTACCGTGCACCGGAACTCTTACTTAATTCATCTGATTACACAGCAGCTATTGATGTCTGGTCTGTTGGTTGTATTTTTATGGAACTGATGGATCGGAAGCCCTTGTTTCCTGGTCGGGATCATGTTCATCAGTTACGCTTGCTTTTGGAGTTGATTGGCACTCCATCCGAGGCTGATCTTGGGTTTTTGAATGAAAATGCTAAGCGATACATACGGCAACTTCCTCTTTACCATCGGCAGTCATTCACTGAAAAATTCCCACATGTCCATCCTGCAGCCATTGATCTGGTGGAGAAGATGCTAACATTTGATCCAGGACAGAGACTTACCGTTGAAGATGCTCTGGCTCATCCTTATTTGACTTCATTGCATGACATTAGTGACGAGCCTGTCTGCATGACACCCTTCAGCTTCGATTTCGAGCAGCATGCGCTTACTGAGGAACAGATGAAAGAGCTGATCCATCTAGAGGCACTCGCATTTAACCCAGAGTACCATCACCAATAA 1185 45.57 MDDGGASLPDDTVMSEAAAVPPQHQPPPVGMENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETSEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIIPPPLRETFNDVYIAYELMDTDLHQIIRSNQGLSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLLELIGTPSEADLGFLNENAKRYIRQLPLYHRQSFTEKFPHVHPAAIDLVEKMLTFDPGQRLTVEDALAHPYLTSLHDISDEPVCMTPFSFDFEQHALTEEQMKELIHLEALAFNPEYHHQ 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 41777046 41790506 - Sed0005909.1 Sed03g2599 708086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2599 394 Gene3D Transferase(Phosphotransferase) domain 1 145 373 - -
Sed03g2599 394 FunFam Mitogen-activated protein kinase 46 155 - -
Sed03g2599 394 ProSitePatterns Protein kinases ATP-binding region signature. 67 91 IPR017441 GO:0005524(InterPro)
Sed03g2599 394 CDD STKc_TEY_MAPK 54 389 - -
Sed03g2599 394 ProSiteProfiles Protein kinase domain profile. 61 346 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2599 394 SMART serkin_6 61 346 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2599 394 SUPERFAMILY Protein kinase-like (PK-like) 66 354 IPR011009 -
Sed03g2599 394 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 54 379 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed03g2599 394 Gene3D Phosphorylase Kinase; domain 1 44 381 - -
Sed03g2599 394 ProSitePatterns MAP kinase signature. 96 199 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2599 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2599 394 FunFam Mitogen-activated protein kinase 145 373 - -
Sed03g2599 394 Pfam Protein kinase domain 66 346 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2599 Sed-Chr3:41777046 Sed05g0755 Sed-Chr5:5911782 1.50E-160 dispersed
Sed14g1516 Sed-Chr14:23465468 Sed03g2599 Sed-Chr3:41777046 4.30E-40 dispersed
Sed03g2599 Sed-Chr3:41777046 Sed04g0107 Sed-Chr4:649301 4.00E-222 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78937 PF00069 Pkinase 8.90E-73 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2599 K14512 - csv:101204301 779.63