Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g2615 | ATGGATATTTCTGAGGTTGAAGAAAATCTATTTGCAGCGAGTGATGCCAAGCTTCATGGAGGAATGTGCCAGACTCTTTCTGCAATATATTGTAAAGTGTTATCAATTTTCCCTGAATTGGAAGCTGCACGACCTCGGAGCAAATCTGGAATCCAGGCATTATGCTCGTTGCATGTGGCACTTGAAAAGGCCAAGAATACTCTCCAATATTGTACAGAGAATAGCAAACTTTACTTGGCTATAACTGGGGACTCCGTCCTGTCAAAGTTTGAGAAGGTAAAAACTTCTCTACAAGATAGTCTTAAACGTGTTGAAGATATTGTTCCACAGTCAATTGGCTATCAGGTTCAGGAGCTTATGACGGAACTGGGGAGTACTCAATTTTTCCTAGATCCTTTGGAGAAGCAAGTTGGTGAGGACATTATTTTATTGCTCCAGCAGGGACGAACATTTAGCAACACTATTGACAAGTATGAGCTTAAGGCTTTTCACCAAGCTGCTATCAGACTTGGAATAAACTCCTCAAGAGCAGCTCTTGCAGAGAGAAGAGCACTAAAGAAACTAATTGACCGGTCTCGTACCGAAGATGACAAAAGGAAGGAATCAATTGTAGCATATCTTTTGCATCTCATTAGGAAGTACTCCAAGTTGTTTAGAAGCGAGGTACCATATGACAATGATTCACAGGGTTCCGGGCCTTGTTCACCCACTGTTCAGAATTCTCTCGAGGACAGTGGATCTAGTGGAAATGGCCAAGCCTTTGATAGGCAACTAACAGAACTTGGTTCTTTTACTTCGAAGCCAAAAAATCGCAGATTGGAGCAGATTACCCTTCCTCCTGATGAGTTGAGGTGTCCTATATCACTGCAGCTTATGTATGATCCGGTCATAATTTCTTCCGGGCAAACATACGAAAGAACTTGCATTGAGAAGTGGTTTAGTGATGGCCATAACACCTGCCCAAAAACTCAACAGAAACTCTCTCATCTTTTACTGACACCGAATTACTGTGTTAAGGGTCTGCTTGCAAACTGGTGTGAACAGCATGGAGTTCCTGTTCCTGATAGGCCACCAGATAGTCTTGACCTCAATTACTGGAGGCTCGCGTTATCTGCATCAGAGTCTCTAAATTCGTCGCCTGTGGACACGGTTGGTTCTTGTAAGTCAAATGACATTGAACTCGTTCCGCTAGAAGAAAATTGTACAGCAGAGGAGTTCAAAGGAACTGTAGTGGATGCTCACTCTACTGAAGACCAAGAATCTGACACAGATATGCTTGCCAGATATGAACAATATTTGAAAGTCTTGAATGAAGAAGCTGACTTGAGGAAAAAGTCGGCGGTCGTGGAGCAAATAAGACTGTTGCTCAAGGATGATGAAGAGGCGAGAGTTTCTATGGGAGCTAATGGATTTGTCCAGGGACTTCTACGCTACTTACAGGTAGCTTTGAAAGAACAAAATGTTAAGGCTCAGGAAAGTGGAGCAATGGCTCTTTTCAACCTTGCTGTCAACAACAACAGGAACAAGGAAATAATGGTGGCAGAAGGTGTGATTTCTTTGTTGGAGAAAATGATTATGAACCCAAATTCCCACGGATCTGCAACGGCCCTCTATCTCAATGTCTCCTGTCTGGAAGAAGCAAAATCTATTATCGGTTCAAGTTGTGCGGTCCCGGTCTTGACCCAACTCCTCCATGCTAATACTGAAACACTATGCAAGCTTGATGCCCTCCACACACTTTATAATATCTCAACTGTGCAGTCCAATATTCCCAACCTGGTTTCTTCTGGAATCATCAGGGGACTTCAATCCCTTCTCGCAGCTTCTCTCGGTCGAACATGGACCGAAAAGTGCATTGCCATCTTTATCAACTTGGCTGCATGTGAATCAGCTAGGGATCAAATGGCATCTACTCCGGAACTTATCGGTGGGTTGGCAGCAGTACTAGACAATGGTGAACCCATTGAGCAAGAACAAGCAGTGGCTTGTCTCTTGATTCTTTGCATTGGGAATGAGAAGTGCAGTGACATGGCCCTACAGGTAGGCGTAATTCTGGGGCTTGTGTCGATGTCTGTGAACGGGACAGCGAGAGGCAAGGAGAAGGCTCAAAAGCTTCTGATGTTGTTCAGGGAGCAACGACAACAGGAACCACCCACACCGACACCAGCATTGAAACCGACACCAACACCAGCATTGAAACCGACACCGGAACTGACCGAGGTATCAGAGAGTAGCGAGACTTCCATGGATGTAGCAGAATCAAAGCCACTGAGCAAGTCATTTACAAGAACAAAAACAGCAAAAGCCTTCAGCTTTTTGTGGAAAAGCAAAAGCTATTCAGTGTACCCATGGTAA | 2355 | 44.25 | MDISEVEENLFAASDAKLHGGMCQTLSAIYCKVLSIFPELEAARPRSKSGIQALCSLHVALEKAKNTLQYCTENSKLYLAITGDSVLSKFEKVKTSLQDSLKRVEDIVPQSIGYQVQELMTELGSTQFFLDPLEKQVGEDIILLLQQGRTFSNTIDKYELKAFHQAAIRLGINSSRAALAERRALKKLIDRSRTEDDKRKESIVAYLLHLIRKYSKLFRSEVPYDNDSQGSGPCSPTVQNSLEDSGSSGNGQAFDRQLTELGSFTSKPKNRRLEQITLPPDELRCPISLQLMYDPVIISSGQTYERTCIEKWFSDGHNTCPKTQQKLSHLLLTPNYCVKGLLANWCEQHGVPVPDRPPDSLDLNYWRLALSASESLNSSPVDTVGSCKSNDIELVPLEENCTAEEFKGTVVDAHSTEDQESDTDMLARYEQYLKVLNEEADLRKKSAVVEQIRLLLKDDEEARVSMGANGFVQGLLRYLQVALKEQNVKAQESGAMALFNLAVNNNRNKEIMVAEGVISLLEKMIMNPNSHGSATALYLNVSCLEEAKSIIGSSCAVPVLTQLLHANTETLCKLDALHTLYNISTVQSNIPNLVSSGIIRGLQSLLAASLGRTWTEKCIAIFINLAACESARDQMASTPELIGGLAAVLDNGEPIEQEQAVACLLILCIGNEKCSDMALQVGVILGLVSMSVNGTARGKEKAQKLLMLFREQRQQEPPTPTPALKPTPTPALKPTPELTEVSESSETSMDVAESKPLSKSFTRTKTAKAFSFLWKSKSYSVYPW | 784 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 42029330 | 42039934 | + | Sed0000503.1 | Sed03g2615 | 708102 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g2615 | 784 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 277 | 352 | IPR013083 | - | |
Sed03g2615 | 784 | ProSiteProfiles | U-box domain profile. | 278 | 352 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed03g2615 | 784 | MobiDBLite | consensus disorder prediction | 719 | 733 | - | - | |
Sed03g2615 | 784 | Pfam | U-box domain | 280 | 349 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed03g2615 | 784 | SMART | Ubox_2 | 282 | 345 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed03g2615 | 784 | SUPERFAMILY | RING/U-box | 279 | 356 | - | - | |
Sed03g2615 | 784 | MobiDBLite | consensus disorder prediction | 738 | 757 | - | - | |
Sed03g2615 | 784 | MobiDBLite | consensus disorder prediction | 224 | 252 | - | - | |
Sed03g2615 | 784 | Gene3D | - | 10 | 105 | IPR036537 | GO:0007166(InterPro) | |
Sed03g2615 | 784 | CDD | RING-Ubox_PUB | 280 | 332 | IPR045210 | - | |
Sed03g2615 | 784 | SUPERFAMILY | ARM repeat | 431 | 710 | IPR016024 | - | |
Sed03g2615 | 784 | MobiDBLite | consensus disorder prediction | 713 | 757 | - | - | |
Sed03g2615 | 784 | PANTHER | U BOX DOMAIN-CONTAINING | 22 | 713 | - | - | |
Sed03g2615 | 784 | Gene3D | - | 407 | 717 | IPR011989 | - | |
Sed03g2615 | 784 | FunFam | RING-type E3 ubiquitin transferase | 278 | 352 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2615 | Sed-Chr3:42029330 | Sed04g0039 | Sed-Chr4:184970 | 0.00E+00 | dispersed | |
Sed03g2615 | Sed-Chr3:42029330 | Sed04g0038 | Sed-Chr4:184970 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g2615 | - | - | - | 0.0 |