Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2615 ATGGATATTTCTGAGGTTGAAGAAAATCTATTTGCAGCGAGTGATGCCAAGCTTCATGGAGGAATGTGCCAGACTCTTTCTGCAATATATTGTAAAGTGTTATCAATTTTCCCTGAATTGGAAGCTGCACGACCTCGGAGCAAATCTGGAATCCAGGCATTATGCTCGTTGCATGTGGCACTTGAAAAGGCCAAGAATACTCTCCAATATTGTACAGAGAATAGCAAACTTTACTTGGCTATAACTGGGGACTCCGTCCTGTCAAAGTTTGAGAAGGTAAAAACTTCTCTACAAGATAGTCTTAAACGTGTTGAAGATATTGTTCCACAGTCAATTGGCTATCAGGTTCAGGAGCTTATGACGGAACTGGGGAGTACTCAATTTTTCCTAGATCCTTTGGAGAAGCAAGTTGGTGAGGACATTATTTTATTGCTCCAGCAGGGACGAACATTTAGCAACACTATTGACAAGTATGAGCTTAAGGCTTTTCACCAAGCTGCTATCAGACTTGGAATAAACTCCTCAAGAGCAGCTCTTGCAGAGAGAAGAGCACTAAAGAAACTAATTGACCGGTCTCGTACCGAAGATGACAAAAGGAAGGAATCAATTGTAGCATATCTTTTGCATCTCATTAGGAAGTACTCCAAGTTGTTTAGAAGCGAGGTACCATATGACAATGATTCACAGGGTTCCGGGCCTTGTTCACCCACTGTTCAGAATTCTCTCGAGGACAGTGGATCTAGTGGAAATGGCCAAGCCTTTGATAGGCAACTAACAGAACTTGGTTCTTTTACTTCGAAGCCAAAAAATCGCAGATTGGAGCAGATTACCCTTCCTCCTGATGAGTTGAGGTGTCCTATATCACTGCAGCTTATGTATGATCCGGTCATAATTTCTTCCGGGCAAACATACGAAAGAACTTGCATTGAGAAGTGGTTTAGTGATGGCCATAACACCTGCCCAAAAACTCAACAGAAACTCTCTCATCTTTTACTGACACCGAATTACTGTGTTAAGGGTCTGCTTGCAAACTGGTGTGAACAGCATGGAGTTCCTGTTCCTGATAGGCCACCAGATAGTCTTGACCTCAATTACTGGAGGCTCGCGTTATCTGCATCAGAGTCTCTAAATTCGTCGCCTGTGGACACGGTTGGTTCTTGTAAGTCAAATGACATTGAACTCGTTCCGCTAGAAGAAAATTGTACAGCAGAGGAGTTCAAAGGAACTGTAGTGGATGCTCACTCTACTGAAGACCAAGAATCTGACACAGATATGCTTGCCAGATATGAACAATATTTGAAAGTCTTGAATGAAGAAGCTGACTTGAGGAAAAAGTCGGCGGTCGTGGAGCAAATAAGACTGTTGCTCAAGGATGATGAAGAGGCGAGAGTTTCTATGGGAGCTAATGGATTTGTCCAGGGACTTCTACGCTACTTACAGGTAGCTTTGAAAGAACAAAATGTTAAGGCTCAGGAAAGTGGAGCAATGGCTCTTTTCAACCTTGCTGTCAACAACAACAGGAACAAGGAAATAATGGTGGCAGAAGGTGTGATTTCTTTGTTGGAGAAAATGATTATGAACCCAAATTCCCACGGATCTGCAACGGCCCTCTATCTCAATGTCTCCTGTCTGGAAGAAGCAAAATCTATTATCGGTTCAAGTTGTGCGGTCCCGGTCTTGACCCAACTCCTCCATGCTAATACTGAAACACTATGCAAGCTTGATGCCCTCCACACACTTTATAATATCTCAACTGTGCAGTCCAATATTCCCAACCTGGTTTCTTCTGGAATCATCAGGGGACTTCAATCCCTTCTCGCAGCTTCTCTCGGTCGAACATGGACCGAAAAGTGCATTGCCATCTTTATCAACTTGGCTGCATGTGAATCAGCTAGGGATCAAATGGCATCTACTCCGGAACTTATCGGTGGGTTGGCAGCAGTACTAGACAATGGTGAACCCATTGAGCAAGAACAAGCAGTGGCTTGTCTCTTGATTCTTTGCATTGGGAATGAGAAGTGCAGTGACATGGCCCTACAGGTAGGCGTAATTCTGGGGCTTGTGTCGATGTCTGTGAACGGGACAGCGAGAGGCAAGGAGAAGGCTCAAAAGCTTCTGATGTTGTTCAGGGAGCAACGACAACAGGAACCACCCACACCGACACCAGCATTGAAACCGACACCAACACCAGCATTGAAACCGACACCGGAACTGACCGAGGTATCAGAGAGTAGCGAGACTTCCATGGATGTAGCAGAATCAAAGCCACTGAGCAAGTCATTTACAAGAACAAAAACAGCAAAAGCCTTCAGCTTTTTGTGGAAAAGCAAAAGCTATTCAGTGTACCCATGGTAA 2355 44.25 MDISEVEENLFAASDAKLHGGMCQTLSAIYCKVLSIFPELEAARPRSKSGIQALCSLHVALEKAKNTLQYCTENSKLYLAITGDSVLSKFEKVKTSLQDSLKRVEDIVPQSIGYQVQELMTELGSTQFFLDPLEKQVGEDIILLLQQGRTFSNTIDKYELKAFHQAAIRLGINSSRAALAERRALKKLIDRSRTEDDKRKESIVAYLLHLIRKYSKLFRSEVPYDNDSQGSGPCSPTVQNSLEDSGSSGNGQAFDRQLTELGSFTSKPKNRRLEQITLPPDELRCPISLQLMYDPVIISSGQTYERTCIEKWFSDGHNTCPKTQQKLSHLLLTPNYCVKGLLANWCEQHGVPVPDRPPDSLDLNYWRLALSASESLNSSPVDTVGSCKSNDIELVPLEENCTAEEFKGTVVDAHSTEDQESDTDMLARYEQYLKVLNEEADLRKKSAVVEQIRLLLKDDEEARVSMGANGFVQGLLRYLQVALKEQNVKAQESGAMALFNLAVNNNRNKEIMVAEGVISLLEKMIMNPNSHGSATALYLNVSCLEEAKSIIGSSCAVPVLTQLLHANTETLCKLDALHTLYNISTVQSNIPNLVSSGIIRGLQSLLAASLGRTWTEKCIAIFINLAACESARDQMASTPELIGGLAAVLDNGEPIEQEQAVACLLILCIGNEKCSDMALQVGVILGLVSMSVNGTARGKEKAQKLLMLFREQRQQEPPTPTPALKPTPTPALKPTPELTEVSESSETSMDVAESKPLSKSFTRTKTAKAFSFLWKSKSYSVYPW 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 42029330 42039934 + Sed0000503.1 Sed03g2615 708102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2615 784 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 352 IPR013083 -
Sed03g2615 784 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed03g2615 784 MobiDBLite consensus disorder prediction 719 733 - -
Sed03g2615 784 Pfam U-box domain 280 349 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed03g2615 784 SMART Ubox_2 282 345 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed03g2615 784 SUPERFAMILY RING/U-box 279 356 - -
Sed03g2615 784 MobiDBLite consensus disorder prediction 738 757 - -
Sed03g2615 784 MobiDBLite consensus disorder prediction 224 252 - -
Sed03g2615 784 Gene3D - 10 105 IPR036537 GO:0007166(InterPro)
Sed03g2615 784 CDD RING-Ubox_PUB 280 332 IPR045210 -
Sed03g2615 784 SUPERFAMILY ARM repeat 431 710 IPR016024 -
Sed03g2615 784 MobiDBLite consensus disorder prediction 713 757 - -
Sed03g2615 784 PANTHER U BOX DOMAIN-CONTAINING 22 713 - -
Sed03g2615 784 Gene3D - 407 717 IPR011989 -
Sed03g2615 784 FunFam RING-type E3 ubiquitin transferase 278 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2615 Sed-Chr3:42029330 Sed04g0039 Sed-Chr4:184970 0.00E+00 dispersed
Sed03g2615 Sed-Chr3:42029330 Sed04g0038 Sed-Chr4:184970 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2615 - - - 0.0