Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2629 ATGTACCTCTCCGACAAGCAGCCTCGCCCAGTTGATATCTACAAGGAAGAACCCGCCCGAGACATGATGATCGAGGTCGTGGCGCCGCAGCCCCCGCCCTCCAACGGCGACCACCACCACATTCAGCCCCACCACCACCACCAACTGATGCTCGGCGACAGCAGCGGCGAGGATCATGAGGTCAAGGCCCCCAAGAAGCGAGCCGAGACCTGGGTCCAGGACGAGACTCGCAGCTTAATCGCCCTCCGAAGGGAGATGGACGGCTTGTTCAACACCTCCAAATCCAACAAGCATTTGTGGGATCAGATTTCCGCCAAGATGCGAGAAAGGGGCTTTGATCGCTCCCCCACTATGTGCACGGACAAGTGGAGGAACTTGCTTAAGGAGTTCAAGAAGGCCAAGCACCATGACAAGGGAAGTGGGTCTGCTAAGATGTCTTGCTATAGAGAGATTGAAGAGATTTTGAAGGAGAGAAGCAAAACTGCGCACTACAAGACCCCCACGCCACCCAAGATTGATTCCTATATACAATTCTCAGACAAGGGAATTGAGGATAATGCTCTATCCTTCGGACCTGTTGAAGCTGCTGGCAGGCCCTCACTCAATCTTGAAAGGCAGCTAGATCACGATGGACATCCCCTTGCCATCACAGCAGCTGATGCAGTTGCTGCAACGGGCATCCCACCATGGAATTGGAGAGAGGCACCCGGAAATGGTGGGGAAGGTCAGGCATTTGGCGGGAGAGTTATATCAGTCAAGTGGGGGGACTACACCAGAAGAATCGGTGTCGATGGCACCTCGGAAGCCATCAAGGAGGCTATCAAGTCTGCATTTAGGTTGAGAACGAAACGTGCATTTTGGTTAGAGGATGAGGACCAGGTTGTCAGAAGTCTGGACAGAGACATGCCTTTAGGAAACTACACTCTTCACCTTGATGAAGGGCTGGCTGTTAAAATCTGCGTCTATGATGAATCTGACCACTTACCAGTACATACTGAAGAGAAAGTTTTTTACACTGAGGATGATTATCGAGATTTTTTAGCTCGTCGGGCCTGGACAAGCCTTCGGGAGTTTGATGGATATAGAAATATTGATAATATGGATGATCTACGTCCTGGTGCAATATACCGTGGTGTAAGTTGA 1143 51.01 MYLSDKQPRPVDIYKEEPARDMMIEVVAPQPPPSNGDHHHIQPHHHHQLMLGDSSGEDHEVKAPKKRAETWVQDETRSLIALRREMDGLFNTSKSNKHLWDQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHHDKGSGSAKMSCYREIEEILKERSKTAHYKTPTPPKIDSYIQFSDKGIEDNALSFGPVEAAGRPSLNLERQLDHDGHPLAITAADAVAATGIPPWNWREAPGNGGEGQAFGGRVISVKWGDYTRRIGVDGTSEAIKEAIKSAFRLRTKRAFWLEDEDQVVRSLDRDMPLGNYTLHLDEGLAVKICVYDESDHLPVHTEEKVFYTEDDYRDFLARRAWTSLREFDGYRNIDNMDDLRPGAIYRGVS 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 42203659 42207878 - Sed0004209.1 Sed03g2629 708116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2629 380 PANTHER FI21293P1 34 372 - -
Sed03g2629 380 MobiDBLite consensus disorder prediction 46 70 - -
Sed03g2629 380 MobiDBLite consensus disorder prediction 30 70 - -
Sed03g2629 380 Pfam Myb/SANT-like DNA-binding domain 70 154 IPR044822 -
Sed03g2629 380 ProSiteProfiles Myb-like domain profile. 63 127 IPR001005 -
Sed03g2629 380 FunFam trihelix transcription factor GT-1 71 133 - -
Sed03g2629 380 SMART sant 67 129 IPR001005 -
Sed03g2629 380 CDD GT1 69 134 - -
Sed03g2629 380 Gene3D - 71 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2629 Sed-Chr3:42203659 Sed07g2866 Sed-Chr7:43410313 3.90E-09 dispersed
Sed03g2629 Sed-Chr3:42203659 Sed03g2630 Sed-Chr3:42203659 6.60E-214 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37945 PF13837 Myb_DNA-bind_4 3.40E-20 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2629 - - - 0.0