Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2639 ATGGAAAATGGCTTCTCTTCTACTCGAAACGATGCATTTCCTATCGGTCTTCGTGTTCTGGTTGTTGATGATGATCCAACATGGCTGAGAATCCTGGAAAAGATGCTGAAAAAGTGCTCTTATGAAGTGACTACATGCTGTTTGGCAAGGGAGGCTCTCAGCCTTCTTAGGGAAAGAAAAGATGGATACGACATCGTAATCAGCGACGTAAACATGCCCGATATGGATGGTTTTAAACTTCTTGAGCATGTAGGATTAGAAATGGACCTGCCAGTTATCATGATGTCGGTCGATGGAGAAACGAGCAGAGTAATGAAAGGAGTGCAGCACGGGGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAAGAACTTAGGAATATTTGGCAGCACGTACTTCGAAAGAAGATACAAGAGGGGAGAGATATTGAAGGCCATGAAGTTATTGAAGGCCTTCAAATTCTTATGAATGGGTCAGATAGGTATGATGATAGCCAGTTCCTCAGAAGTGAGGAGCTGTTTTCAGTGAGGAAAAGAAAAGATATGGATAAGCATGAGGACAAAGACTTTGGTGATACATCTTCAACAAAGAAAGCCAGAGTTGTTTGGTCAGTTGATCTGCACCAGAAATTTGTAAAAGCTGTAAACCATATAGGTTTTGACAAAGTCGGCCCTAAAAAGATTCTTGATCTGATGAATGTCCCTTGGCTAACTAGGGAAAATGTAGCTAGCCACTTGCAGAAATACCGCCTCTATTTGAGTCGACTGCAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTCGGGATGAAGCATACCGATTCGAGTTCAAAGGAAGGAGATGGAAACTTCAGCCTTTGTAGCTCATTAGTGGTGCCACAAAATGATGTCACCAATAGCAGCTTCAGTTTTTCAGGTGACAACTTCCTTCAGAATGTAGATTCCATAGGCTGTGAAGTTGATAGGAAAAGGATTGTTCAAGAGCATACATCAGAGCCAAAAAGAGTCGTTGCTGCTGCTGCTAGGAGTATTCCCGAACCAATAAAAACGCAGTGTACGAAGATGAACTTCAACAACTCTTTTGCCTCTGTTGAATCTGAAGGGAAGTTTGCAGCATTTGATTCAAGCAACAAAACATGTTACCCTTGGGTTGAAGCTCAAGAGATCAAGTTCAAACAAGAAAGCAAGCCACTTGTGCATTTAGAAGGAGATTTCAGTCATTTCCCTCCAACGGTACCACCTCATCAAATTCAAATTGGCCAACTACAATCGATTTCAACGATAAGTTCTGGACAGTCTGCAGCAGAGAAAGACAAAGCAAGCTCCATTGAAAGGAAACCTCCGTATTCTGAGGGAAGTAGCCAACAGGTGGTCCATTTGAATCTACCAAAAACTCCAACTGAGTCATTTTCTGGCAAGGCTAAGAGTTTCAATGAGATAAATGACCATTTTGAGCTCATTTCAACTACTACTCCATTGGAAATGAAAAACCAGAATTTCAACCTTAACTGCAATTCAACTGATTTAGGAACTGGGTTACCTTTTGCAACCTTTGAAGAAGACAACTTTCAGGGCTATTTGCTTCAAGATGGTTGTTGTCATTCAAAGATCTTCGAACAGCAAATAATAGAGTTTCCAGATTATGGTGATCCCGGTATCTTCACTGATGTTTCGACTCACCTTTACGATGCAATGAGGTTTGGCTATGAGTATGCCTATGACCCAACTGAGTATCCAGTGATAGATGAGGGCCTATTTATTGCATGA 1767 41.31 MENGFSSTRNDAFPIGLRVLVVDDDPTWLRILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHEVIEGLQILMNGSDRYDDSQFLRSEELFSVRKRKDMDKHEDKDFGDTSSTKKARVVWSVDLHQKFVKAVNHIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKHTDSSSKEGDGNFSLCSSLVVPQNDVTNSSFSFSGDNFLQNVDSIGCEVDRKRIVQEHTSEPKRVVAAAARSIPEPIKTQCTKMNFNNSFASVESEGKFAAFDSSNKTCYPWVEAQEIKFKQESKPLVHLEGDFSHFPPTVPPHQIQIGQLQSISTISSGQSAAEKDKASSIERKPPYSEGSSQQVVHLNLPKTPTESFSGKAKSFNEINDHFELISTTTPLEMKNQNFNLNCNSTDLGTGLPFATFEEDNFQGYLLQDGCCHSKIFEQQIIEFPDYGDPGIFTDVSTHLYDAMRFGYEYAYDPTEYPVIDEGLFIA 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 42303883 42307192 - Sed0016503.1 Sed03g2639 708126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2639 588 SMART REC_2 17 129 IPR001789 GO:0000160(InterPro)
Sed03g2639 588 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Sed03g2639 588 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160(InterPro)
Sed03g2639 588 Gene3D - 17 179 - -
Sed03g2639 588 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 338 IPR045279 GO:0009736(InterPro)
Sed03g2639 588 SUPERFAMILY CheY-like 16 140 IPR011006 -
Sed03g2639 588 Gene3D - 194 257 - -
Sed03g2639 588 MobiDBLite consensus disorder prediction 433 458 - -
Sed03g2639 588 FunFam Two-component response regulator 17 172 - -
Sed03g2639 588 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Sed03g2639 588 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677(InterPro)
Sed03g2639 588 FunFam Two-component response regulator 194 257 - -
Sed03g2639 588 CDD REC_typeB_ARR-like 19 133 - -
Sed03g2639 588 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2639 Sed-Chr3:42303883 Sed04g1768 Sed-Chr4:32307521 5.60E-79 dispersed
Sed03g2639 Sed-Chr3:42303883 Sed03g2640 Sed-Chr3:42303883 1.30E-290 tandem
Sed03g2639 Sed-Chr3:42303883 Sed04g0021 Sed-Chr4:115763 1.90E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37947 PF00072 Response_reg 1.20E-24 CL0304 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2639 K14491 - csv:101204370 983.015