Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2641 ATGGAAAATCCAATCTTTCTTCTTATAACCTTCGCTGTTCTTCTCCAAATGTGTTCTATTTCATCCTCTCCCGTCGCCGATCCCGATCGAGTAGCCCAAGAAGTTATCACGAGCATCAAGAATGCAACAGCAAGAAGGAGTTTGGGGTTTTTGTCATGTGGAACCGGGAACCCGATAGACGACTGCTGGAGGTGCGACCCCAATTGGGAGAAGAATCGAAAGCGGCTAGCCGAGTGCGGCATTGGGTTCGGAAAGCAAGCCATAGGAGGCAGAGACGGCAAATTCTACATAGTCACAGACCCATCCGACAAGGATGTAGTGAACCCAAAACCCGGGACTCTCCGCCACGCCGTAATCCAAAACGAGCCCTTATGGATCATGTTCCAACGCGACATGGTCATCAAGTTAAAAGCAGAGCTGATCATGAACTCATTCAAGACCATCGATGGTCGAGGCGTGTCGGTCCACATCGCGGGCGGGCCTTGCATTACAATCCAATTTGTGACCAACATTATAATCCACGGCATCAACATTCACGACTGCAAACAAGGAGGGAACACCAACGTTAGAGATTCGCCGGACCATTTCGGTTGGAGGACTCTGTCGGACGGGGACGGGGTTTCCATTTTCGGGGGCAGCCATGTTTGGATCGACCATTGTTCTTTGTCCAATTGCCTCGATGGGTTGATCGATGCGATTCATGGGTCTACGGCTATAACTATTTCCAACAATTACATGACCCATCATAACAAAGTTATGCTTTTGGGACACAGTGATTCCTACACTCAAGATAAGAATATGCAAGTTACCATTGCTTTTAACCATTTTGGTGAGGGCCTTGTTCAAAGAATGCCGCGATGCCGACATGGGTATTTCCATGTGGTAAATAATGACTATACTCATTGGATCATGTACGCCATTGGTGGAAGTGCATCTCCCACTATTAATAGCCAAGGAAATAGATTCCTTGCTCCTGATAACCAAGATAGAAAAGAGGTGACGAAACACGAGGATGCTCCCCAAAGTAAATGGAAGAATTGGAATTGGAGATCGGATGGAGATTTGATGTTGAATGGAGCATTCTTCACGAGGTCAGGTGCGGGAGCGTCATCTAGCTATGCAAGGGCTTCGAGCTTGAGTGCGAAGTCATCATCACTGGTGAGTTCGATTACGGCTGGAGCGGGGGTGCTACGATGCCGAACGGGTTCCCAGTGCTAG 1218 48.28 MENPIFLLITFAVLLQMCSISSSPVADPDRVAQEVITSIKNATARRSLGFLSCGTGNPIDDCWRCDPNWEKNRKRLAECGIGFGKQAIGGRDGKFYIVTDPSDKDVVNPKPGTLRHAVIQNEPLWIMFQRDMVIKLKAELIMNSFKTIDGRGVSVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTNVRDSPDHFGWRTLSDGDGVSIFGGSHVWIDHCSLSNCLDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRFLAPDNQDRKEVTKHEDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSLVSSITAGAGVLRCRTGSQC 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 42361412 42363944 - Sed0021851.1 Sed03g2641 708128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2641 405 Pfam Pectate lyase 166 322 IPR002022 -
Sed03g2641 405 PANTHER PECTATE LYASE 18-RELATED 13 402 IPR045032 GO:0030570(InterPro)
Sed03g2641 405 SUPERFAMILY Pectin lyase-like 37 400 IPR011050 -
Sed03g2641 405 Gene3D - 56 398 IPR012334 -
Sed03g2641 405 FunFam Pectate lyase 56 398 - -
Sed03g2641 405 SMART amb_all 131 328 IPR002022 -
Sed03g2641 405 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Sed03g2641 405 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Sed03g2641 405 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Sed03g2641 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Sed03g2641 405 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Sed03g2641 405 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Sed03g2641 405 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Sed03g2641 405 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1572 Sed-Chr1:11423477 Sed03g2641 Sed-Chr3:42361412 1.90E-182 dispersed
Sed03g2641 Sed-Chr3:42361412 Sed04g0011 Sed-Chr4:77612 1.60E-213 dispersed
Sed03g2641 Sed-Chr3:42361412 Sed09g0193 Sed-Chr9:1553900 1.60E-173 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2641 K01728 - csv:101208076 709.909