Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g2641 | ATGGAAAATCCAATCTTTCTTCTTATAACCTTCGCTGTTCTTCTCCAAATGTGTTCTATTTCATCCTCTCCCGTCGCCGATCCCGATCGAGTAGCCCAAGAAGTTATCACGAGCATCAAGAATGCAACAGCAAGAAGGAGTTTGGGGTTTTTGTCATGTGGAACCGGGAACCCGATAGACGACTGCTGGAGGTGCGACCCCAATTGGGAGAAGAATCGAAAGCGGCTAGCCGAGTGCGGCATTGGGTTCGGAAAGCAAGCCATAGGAGGCAGAGACGGCAAATTCTACATAGTCACAGACCCATCCGACAAGGATGTAGTGAACCCAAAACCCGGGACTCTCCGCCACGCCGTAATCCAAAACGAGCCCTTATGGATCATGTTCCAACGCGACATGGTCATCAAGTTAAAAGCAGAGCTGATCATGAACTCATTCAAGACCATCGATGGTCGAGGCGTGTCGGTCCACATCGCGGGCGGGCCTTGCATTACAATCCAATTTGTGACCAACATTATAATCCACGGCATCAACATTCACGACTGCAAACAAGGAGGGAACACCAACGTTAGAGATTCGCCGGACCATTTCGGTTGGAGGACTCTGTCGGACGGGGACGGGGTTTCCATTTTCGGGGGCAGCCATGTTTGGATCGACCATTGTTCTTTGTCCAATTGCCTCGATGGGTTGATCGATGCGATTCATGGGTCTACGGCTATAACTATTTCCAACAATTACATGACCCATCATAACAAAGTTATGCTTTTGGGACACAGTGATTCCTACACTCAAGATAAGAATATGCAAGTTACCATTGCTTTTAACCATTTTGGTGAGGGCCTTGTTCAAAGAATGCCGCGATGCCGACATGGGTATTTCCATGTGGTAAATAATGACTATACTCATTGGATCATGTACGCCATTGGTGGAAGTGCATCTCCCACTATTAATAGCCAAGGAAATAGATTCCTTGCTCCTGATAACCAAGATAGAAAAGAGGTGACGAAACACGAGGATGCTCCCCAAAGTAAATGGAAGAATTGGAATTGGAGATCGGATGGAGATTTGATGTTGAATGGAGCATTCTTCACGAGGTCAGGTGCGGGAGCGTCATCTAGCTATGCAAGGGCTTCGAGCTTGAGTGCGAAGTCATCATCACTGGTGAGTTCGATTACGGCTGGAGCGGGGGTGCTACGATGCCGAACGGGTTCCCAGTGCTAG | 1218 | 48.28 | MENPIFLLITFAVLLQMCSISSSPVADPDRVAQEVITSIKNATARRSLGFLSCGTGNPIDDCWRCDPNWEKNRKRLAECGIGFGKQAIGGRDGKFYIVTDPSDKDVVNPKPGTLRHAVIQNEPLWIMFQRDMVIKLKAELIMNSFKTIDGRGVSVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTNVRDSPDHFGWRTLSDGDGVSIFGGSHVWIDHCSLSNCLDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRFLAPDNQDRKEVTKHEDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSLVSSITAGAGVLRCRTGSQC | 405 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 42361412 | 42363944 | - | Sed0021851.1 | Sed03g2641 | 708128 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g2641 | 405 | Pfam | Pectate lyase | 166 | 322 | IPR002022 | - | |
Sed03g2641 | 405 | PANTHER | PECTATE LYASE 18-RELATED | 13 | 402 | IPR045032 | GO:0030570(InterPro) | |
Sed03g2641 | 405 | SUPERFAMILY | Pectin lyase-like | 37 | 400 | IPR011050 | - | |
Sed03g2641 | 405 | Gene3D | - | 56 | 398 | IPR012334 | - | |
Sed03g2641 | 405 | FunFam | Pectate lyase | 56 | 398 | - | - | |
Sed03g2641 | 405 | SMART | amb_all | 131 | 328 | IPR002022 | - | |
Sed03g2641 | 405 | PRINTS | Pollen allergen Amb family signature | 79 | 96 | IPR018082 | - | |
Sed03g2641 | 405 | PRINTS | Pollen allergen Amb family signature | 305 | 324 | IPR018082 | - | |
Sed03g2641 | 405 | PRINTS | Pollen allergen Amb family signature | 203 | 224 | IPR018082 | - | |
Sed03g2641 | 405 | PRINTS | Pollen allergen Amb family signature | 376 | 399 | IPR018082 | - | |
Sed03g2641 | 405 | PRINTS | Pollen allergen Amb family signature | 103 | 128 | IPR018082 | - | |
Sed03g2641 | 405 | PRINTS | Pollen allergen Amb family signature | 347 | 371 | IPR018082 | - | |
Sed03g2641 | 405 | PRINTS | Pollen allergen Amb family signature | 139 | 155 | IPR018082 | - | |
Sed03g2641 | 405 | PRINTS | Pollen allergen Amb family signature | 283 | 302 | IPR018082 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1572 | Sed-Chr1:11423477 | Sed03g2641 | Sed-Chr3:42361412 | 1.90E-182 | dispersed | |
Sed03g2641 | Sed-Chr3:42361412 | Sed04g0011 | Sed-Chr4:77612 | 1.60E-213 | dispersed | |
Sed03g2641 | Sed-Chr3:42361412 | Sed09g0193 | Sed-Chr9:1553900 | 1.60E-173 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g2641 | K01728 | - | csv:101208076 | 709.909 |