Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g2665 ATGGGGACTGAATTGCCACTTGTTTCCAAACATGGCTTCTTTCTTTTTACCAGCGTTCTTGTGTTACTTGAGACCTTCACATTGGCAGTTCCCAGGTCTCAAACAGTGAAGATACTCTGTGCAACCGTTTTAGAGCACAACACAACGGCTTTTGTGCCCAATTTCGTGGGGACGATGCAAATGATCAGTGATCAAATGCGAACTTCTGGTTTCGGAGTGGCAGTTGCGGGCAAAGGCCCCGACGCCAACTACGGCCTGGCTCAATGTTACGGAGATTTATCGCTCATGGATTGCGTGTTGTGTTATGCGGAGGCTCGCACTGTCCTCCCGCAATGCTTCCCTTTCAATGGGGGCCGGATTTTCCTGGATGGCTGCTTCATGAGGGCTGAGAATTACAGCTTTTATGAGGAGTTTAAAGGGCCTCTGGACAGGGCTGTGTGTAACACCACTTCCATTGTTAGCAACTCCCTTTTCGGACAGTCGGCCAGGCAGGCCGTGGCCAGTGCCGTTGACACTGCACCCAACAATGGAGGCTATGCCAGAGTTCATGTGGCTGTCCCTGGAGCCCCCAATGCCTCGGTTTACTTGTTGGCTCAGTGCTGGAGGAATTTGAACCGCAGCTCCTGCACTTCCTGTCTGCGAAACGCCTCTGCTTCTATCCTCCAATGCTTGCCTCGATCCGAAGCCAGAGCCCTCAACACAGGTTGCTTCATGCGATACTCTAATGTCGACTTCCTCAATGCAGAAGCTCGAGCCACAAGGTCGAGAGCTGCCATTATAGGAATTGCAGTCTCAGTGGTCAGCGCTGTTGTTGTTTTGGGTGTTGGGATTTTTATTGGAAACTACATCTGGAAGATCAGATATATCAAGAAGAAACGAAGAGGTACAAATGATGCAAACAAGATGGTGAAAACACTCAACAATAGTAGCTTGAATTTCAAGTACTCTACCCTTGAGAAGGCAACAGGATCTTTTGCTGAGGCTAACAAGCTTGGACAAGGAGGATTTGGCACTGTTTATAAGGGAGTTCTTTCGGATGGAAGAGAAATAGCTGTGAAGAGGCTTTTCTTCAATAACAAACATAGAGCAACAGATTTTTACAATGAAGTAAACATAATTAGTAGTGTGGAGCACAAAAACTTAGTAAGGTTGCTTGGTTGTAGCTGTTCTGGACCTGAAAGTCTGCTTGTCTACGAATTCCTTCCCAACAAGAGTCTGGACCGCTTCATATTTGATCGAGTTAGAGGCAGAACCCTCAATTGGGAGAAGAGATTTGATATTATAGTGGGAACAGTTGAAGGTTTGGCTTACCTGCACGAAAACTCGAAAACCAAGATCATTCACAGAGACATCAAAGCTAGTAACATCCTGCTAGACTCGAGGCTCCGAGCTAAAATTGCTGATTTTGGATTAGCTAGATCCTTCGAAGAAAACGTTAGCCATATCAGCACTGCTATTGCTGGAACCTTGGGATATATGGCACCAGAGTACTTAGCTCACGGCCAGCTAACCGAAAAGGCAGATGTTTACAGTTTTGGAGTGGTTTTGCTGGAAACCATCACTGGAATACAAAACAGTAGGAGCAAAACCTCGGACTACTTGGAAAGCATAGTACTAATTACATGGAAGCACTTTCAATCGGGAACAACGGAAAGGATATACGATCCAAACCTGATGGTTGACGAGAAGGACGAAGATGGGAGCATGAAAGAGGAGATATTGAGAGTGATGCACATAGGACTTTTGTGCACCCAGGAGATTGCATCTCTGCGACCAACAATGTCAAAGGTGCTGCAAATGCTACTGAAGAAGGAAGAGACACTTCCAGCACCGAGCAACCCGCCGTTCATGGACGAGAGGACAATGGAACTCAAGGACACCAGCGAGGACCCATCATACTACAACAACACGGAAGGTTCTTCCTCAGCTGCCACCTTCACCCATAGTTCATTTCATCCCAGTTTTGTAGATAATTATGCAAAGCAGCACTGTTCTCAGAAAAACAAAACCCCAGATTCAATGGCGATCCAGCTTGTTTCTGCATCCAAACATGTCTTATTCTCAGTTGTTCTTCTGCTCCTTGGAAGTTCAACTATGGGGAATCCAAGAGACCAAACTGTGAAAGTCATTTGTGGGAAAGAACTGGAGCACAACACCACAGCATATGTTCCAAATTTCTTTGGCTCAATGGAAAAAGTTAGACAAAAAATCACAACTTTTGGATTTGGAACGGCGGGTACAGGAACAGGACCTGATGCCAGCTATGGACTTGCCAACTGCCATGAAGATCTCTCATCCCATGAATGTACGCTCTGTCATTCTCAAGCGCGTACAGTGCTTCCCCAATGCTTCCCTTTCAACGGCGGCCGAGCATTCATTGATGGCTGCTTCCTGCGGTTCCAAAACTACAGCTTTTTCGATGAATATAGAGGCCCGGAAGACATGACAGTCTGTGGGAACTTGACTCATATTGACCCCAATTACAGACAAGCAGCTAGGGATGCGGTGATGCAAGTGGTCAATGGTGCACCAGCCAACAAAGGCTTTGGGAAAGCTCGATTCGCTGTCGCCGGGATGGCAAACGAGTCTGCAGTTTATGCTTTGGGTCAGTGCTGGAGAAGTTTGAACCATACCTCTTGCAGTTCATGTTTGAAAATTGCTTCTGCTTCGATGCTGCGGTGTTTGCCTCGATCCGAAGGGCGAGCGTTGTACACAGGCTGCTTCATGAGATATTCAGACACAGACTTCCTCAATAAGGACATCAAAGATAGTTCCAGAGCTGCCACAAAAACTGCGTTGATAATTGCAATCTTGAGTTCTGTTGTTGTTATGATAATTGGAGTGGTGATCGGTTTCTTTATCTGGAAGCAAAGATACATACAGAAGAAAAGGAAAGGAGATTCAACTGATGTGAAGAAGTTGACAAAAACTCTTAAAGATAGTAACTTGGACTTCAAGTACTCAACCCTTGAAAAGGCTACCAACAATTTCAGCCTTCAAAACAAGATTGGACAAGGAGGTTTTGGCTCTGTTTATAAGGGAAATTTACCTGATGGAAGAGAGATTGCTGTCAAGAGATTCTTCTTCGATAACAGACATAGAGGAGCAGATTTCTACAATGAAATAAACATGATTAGCAGTGTAGAACATAAAAATCTGGTAAGGTTGCTTGGATGCAGTTGTTCTGGACCTGAAAGCCTACTTGTTTATGAATACCTACCAAATAAGAGTCTCGATCGCTTCATTTTCGGTACCAATAACAGTAAAGCTCTTGATTGGGAAAAGAGATATATTATCATAATAGGAACGGTTGAAGGTTTAGTATATCTACATGAAAATCCAAAGATCAAAATTATACACAGAGATATAAAGGCCAGTAATATCTTGCTCGATCAAAAGCTTCAAGCAAAGATAGCAGATTTTGGATTAGCAAGGTCTTTCCAAGAAAACAAGAGTCATATTAGCACTGCCATTGCAGGAACTCTAGGTTATATGGCTCCGGAGTATCTAGCTTATGGTCAGTTAACAGAGAAGGCTGATGTCTATAGCTTTGGAGTGCTTTTGTTAGAAATTGTTACAGGATTCCAATACAGTGGCATTCAAGTCTCGGGAAACATTGAAAGTCTTATCAATGCTATGTGGAGGCATTTCCAAGAAGGTACAGTTGAGAGGCTATTTGATCCAAATCTAAACCTTCAGAATCACTACAACAAAAATGTGAAGGACGAGGTACTGAGAGTGGTGCACATAGGGCTTTTATGCATTCAGGAGATTCCATCTCTACGACCAACAATGTCGAAGATACTACGAATGCTGACTATGGAGGAGGAAGAGCACCTTCCTCCACCCACCAAGCCACCCTTCATAGATGAGATGACCATGGAACTTGATTACTCGTGCAAGGACTCGCAATATTGTTCCATTACAGAGGCCTCTTCTTCAACTGCCACAGTCAGCCATAGTGCTTTTCATCCCAGATAA 3981 44.46 MGTELPLVSKHGFFLFTSVLVLLETFTLAVPRSQTVKILCATVLEHNTTAFVPNFVGTMQMISDQMRTSGFGVAVAGKGPDANYGLAQCYGDLSLMDCVLCYAEARTVLPQCFPFNGGRIFLDGCFMRAENYSFYEEFKGPLDRAVCNTTSIVSNSLFGQSARQAVASAVDTAPNNGGYARVHVAVPGAPNASVYLLAQCWRNLNRSSCTSCLRNASASILQCLPRSEARALNTGCFMRYSNVDFLNAEARATRSRAAIIGIAVSVVSAVVVLGVGIFIGNYIWKIRYIKKKRRGTNDANKMVKTLNNSSLNFKYSTLEKATGSFAEANKLGQGGFGTVYKGVLSDGREIAVKRLFFNNKHRATDFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFDRVRGRTLNWEKRFDIIVGTVEGLAYLHENSKTKIIHRDIKASNILLDSRLRAKIADFGLARSFEENVSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVVLLETITGIQNSRSKTSDYLESIVLITWKHFQSGTTERIYDPNLMVDEKDEDGSMKEEILRVMHIGLLCTQEIASLRPTMSKVLQMLLKKEETLPAPSNPPFMDERTMELKDTSEDPSYYNNTEGSSSAATFTHSSFHPSFVDNYAKQHCSQKNKTPDSMAIQLVSASKHVLFSVVLLLLGSSTMGNPRDQTVKVICGKELEHNTTAYVPNFFGSMEKVRQKITTFGFGTAGTGTGPDASYGLANCHEDLSSHECTLCHSQARTVLPQCFPFNGGRAFIDGCFLRFQNYSFFDEYRGPEDMTVCGNLTHIDPNYRQAARDAVMQVVNGAPANKGFGKARFAVAGMANESAVYALGQCWRSLNHTSCSSCLKIASASMLRCLPRSEGRALYTGCFMRYSDTDFLNKDIKDSSRAATKTALIIAILSSVVVMIIGVVIGFFIWKQRYIQKKRKGDSTDVKKLTKTLKDSNLDFKYSTLEKATNNFSLQNKIGQGGFGSVYKGNLPDGREIAVKRFFFDNRHRGADFYNEINMISSVEHKNLVRLLGCSCSGPESLLVYEYLPNKSLDRFIFGTNNSKALDWEKRYIIIIGTVEGLVYLHENPKIKIIHRDIKASNILLDQKLQAKIADFGLARSFQENKSHISTAIAGTLGYMAPEYLAYGQLTEKADVYSFGVLLLEIVTGFQYSGIQVSGNIESLINAMWRHFQEGTVERLFDPNLNLQNHYNKNVKDEVLRVVHIGLLCIQEIPSLRPTMSKILRMLTMEEEEHLPPPTKPPFIDEMTMELDYSCKDSQYCSITEASSSTATVSHSAFHPR 1326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 42895458 42903800 + Sed0008899.1 Sed03g2665 708152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g2665 1326 CDD STKc_IRAK 1003 1273 - -
Sed03g2665 1326 SUPERFAMILY Protein kinase-like (PK-like) 306 602 IPR011009 -
Sed03g2665 1326 FunFam Cysteine-rich receptor-like protein kinase 2 401 609 - -
Sed03g2665 1326 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1118 1130 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2665 1326 FunFam Cysteine-rich receptor-like protein kinase 3 143 245 - -
Sed03g2665 1326 FunFam Cysteine-rich receptor-like protein kinase 2 704 805 - -
Sed03g2665 1326 ProSiteProfiles Protein kinase domain profile. 325 608 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2665 1326 ProSiteProfiles Gnk2-homologous domain profile. 33 134 IPR002902 -
Sed03g2665 1326 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524(InterPro)
Sed03g2665 1326 FunFam Cysteine-rich receptor-like protein kinase 2 33 134 - -
Sed03g2665 1326 FunFam Putative DUF26-domain receptor-like protein kinase family protein 967 1072 - -
Sed03g2665 1326 FunFam Cysteine-rich receptor-like protein kinase 3 814 916 - -
Sed03g2665 1326 FunFam Putative DUF26-domain receptor-like protein kinase family protein 294 400 - -
Sed03g2665 1326 Pfam Protein kinase domain 327 534 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2665 1326 Pfam Protein kinase domain 998 1270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2665 1326 ProSiteProfiles Gnk2-homologous domain profile. 704 805 IPR002902 -
Sed03g2665 1326 SMART serkin_6 997 1274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2665 1326 SMART serkin_6 325 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2665 1326 Gene3D - 33 134 IPR038408 -
Sed03g2665 1326 Gene3D - 704 805 IPR038408 -
Sed03g2665 1326 Gene3D - 815 916 IPR038408 -
Sed03g2665 1326 Gene3D - 142 245 IPR038408 -
Sed03g2665 1326 FunFam Cysteine-rich receptor-like protein kinase 2 1073 1280 - -
Sed03g2665 1326 CDD STKc_IRAK 331 603 - -
Sed03g2665 1326 Gene3D Phosphorylase Kinase; domain 1 957 1072 - -
Sed03g2665 1326 Gene3D Phosphorylase Kinase; domain 1 286 400 - -
Sed03g2665 1326 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g2665 1326 ProSiteProfiles Gnk2-homologous domain profile. 809 916 IPR002902 -
Sed03g2665 1326 Gene3D Transferase(Phosphotransferase) domain 1 1073 1281 - -
Sed03g2665 1326 Gene3D Transferase(Phosphotransferase) domain 1 401 611 - -
Sed03g2665 1326 ProSitePatterns Protein kinases ATP-binding region signature. 1003 1025 IPR017441 GO:0005524(InterPro)
Sed03g2665 1326 ProSiteProfiles Gnk2-homologous domain profile. 140 245 IPR002902 -
Sed03g2665 1326 SUPERFAMILY Protein kinase-like (PK-like) 982 1293 IPR011009 -
Sed03g2665 1326 ProSiteProfiles Protein kinase domain profile. 997 1289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g2665 1326 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 177 635 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Sed03g2665 1326 Pfam Salt stress response/antifungal 48 132 IPR002902 -
Sed03g2665 1326 Pfam Salt stress response/antifungal 718 803 IPR002902 -
Sed03g2665 1326 Pfam Salt stress response/antifungal 147 242 IPR002902 -
Sed03g2665 1326 Pfam Salt stress response/antifungal 827 913 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2665 Sed-Chr3:42895458 Sed08g1402 Sed-Chr8:28596307 6.60E-120 dispersed
Sed03g2665 Sed-Chr3:42895458 Sed06g1658 Sed-Chr6:41341320 4.00E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78938 PF00069 Pkinase 1.60E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g2665 - - - 0.0